Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01508 ATGAAACCGCTCCCCAGAACTCGACCGTCTCCGTCCACCGGCGCCGATGACGGCTGGTCCGAGGAGGCCACATTCACACTCATCGACGCCTGGGGCAAACTTTACAAGACGCTTAACCCTAGAAACCTCCGTCAGTATCACTGGAAGGAGGTCGCAAAAGCCGTCAACGACAATCACGCCTTCGTCAGAAAAGCGCGCCGCTCTTACGATCAGTGCAAAAGCCGCATCAACGCGCTCAAGAAGAGGTACGCTACCGAGAAAGCTAAGGTTTCTGATTCCGGCGACTACGACTACGCATGGCCCTTTTTCGAGAAAATCAATTCCGTCATTGGAGATGTTTTACCGGTGAAGAAGCCATCGCTATCGCCGCCGGTTGTCACTCCTGTTAGGGCTTCGGCATGGGCGCTTGCTCCGGTTGGTCGCCGATCTTGGACTCAGAGTCAGAGCAGTCTAAAACGACCTGCGCCGGAGATAACATCGCCTTCGGGGAGCTTGGGTGAATCGCGTTTTAATCGGAATTTAGCTGCCTTTGCTGCAGCGGCTGCTGCAGCCGCGGAAGAGGAGATTGATGATTCGAATTCCGATAACTCAGATTCAGATTATTTGGAGTTGAGCAATGAGAGTGAGAAGAGGAAGAGGGGAAGAAATGATACGGAATTTGGGCATAGAGAGGTTGCAAGTGCTACAGACAAGTTTAGTGAGATACATGAGAGAGTGGACGCATCAAAGCAGAGAAAAAATGTGGCTTTGGAGAAACAGAAGATGCAATTTTCGAAGGATTCTCAGAGAATGCAGCTTCATAAAACCAACCACTCAAAACACATGGATGATCTCTTGGCTCATTCCAGAAGTGGTTTAGATACTCAGTCTACCAACAGAAAGCGTAAACGTGGTCCCACACAAATGAAAAAGTTAGCACTTATTGATGGACAAAGGATACCGATTGAATTTAATCAATTAACGGATGAGGACGTGAAAGATGACATCTGGACAAGCATCTTGGAAATATGGGATGTTCCTAATTCTGGGTTCTTACGTAAAAAATTGATGTCTTATGTGGGTGAACGTTGGAGGAATTTTAAGACTCATTTGACTTCCAAATATGTACATGGAGATCTGAGTGATATATCTCCTCTTGAGGTCTATAGTTTTCTAACTGAAGAAATATGGGAGGAGTTTGTTCAAATGCGATTGGACCCTTCCTTTCAGGAGAAAAGAAAGAAAGCGCAAATCAGTTCTTTTCTAAACAAACACCCTCACAGATTGTCTCGTGGGGGATATGAGTTGCTCGAGGAGAAGATAATGCAAGAGAAATTAAAACAAAAAGACGAATCATCGGGAGATTCAGTAATTGCACCTCCATCTCCACCAGCACGCCATGAACAATGGAAGAAAGCTCGACAAAATGCATCAGGAGATTACATAACAGAGGACACACGCATCATTGCTGAGAAAATTGATTCTCTTGTTGAAAAAGCATCTCAAGGAGCTTTTGTTCCACAAGGACGTAAAGATATTTTGGCAGAAGCCATTGGCCGTCCTGACCACTCTGGTGGTGTTCGTGGTGTTGGTCGTGGTGTCGGTATTCGACAATACTTTGGACCACATTCACGTGAAGCCTCCACTCCACCTGTTTTTAGTAGCGAACAAATAGAGACCATAAAAGTGGAGCTTACTCAACAAATTAGAGAGCAATTGATACATGATTTGTCATCTATGGGTTTCTCTAAGATTTTACCAGCTAGTTCTCCTAATAACATTGTGCCTGCGTGCCCGAAGGGTAGTCACTCCATTGAGCCGCCTATACCAGAGGAGGATGAAATCCCAAAACAATGTGAACTGTATGTTGATAATTTAATTCATGCCGTGGCCTTTGGTAGTGTTTACAAGTTAGGGCTCACCATACATAATCAAATGCTAGAAAAGGATATGGTGAGGGTGGTAGTTAACGAGGTCCTAGATGCAAATGCTCAAGTGCCTATGCCCACAGATGAAGTGGAAACGGTTGGGCACGCTCTTAACAATTTTATTCAATGGCCGAAAAGACTTGTGCAAATTATTTCTGATAAGGATGCTGATGGATCTGGGGAAGAGGACATTTCAGCCAAAAGGGTGGACCCTCAACTAGATTCAGTTCAACAATTGGTTTTAAAGGCAATGTGTATGTCAGAATCTATAAAGCTCGAATTGGAACACGAAAGGATGAAGTTTCTCTGGCTCTCACAGAGAGATATTATGGAATTGTGTATGGGCAAACAAGAGTTATCCATAACTGTTCTACGATTGTGGCTAACGTATTTGAATCGCCTTTCTATTAATGAGGGTAAGAGTGACTTGTATGGATTTATTGATCCATGTTTTATTCAAAGTCCACATGATCCAACTAAAGCTGAAGCCTACATACAGAATAAGTTATACAATGATAAAAAAGAGTGTTACCTAGCTCCTTATCACAACAACCGTCATTGGCAATTGCTCATTGTTTGCCCTAAGAAGAATCATGTAGTATTCCTATGTTCGTTGGAAAAAAAACCAGATAAAAATATTATTCACACTATAGATACAGCTTTTGAACGATATCATAAGCTGCAAGGTGTTCAAAAGAAGAAGCCAATATGGAATGTCCCCGTCTGTCAAAGACAGCCCGGTACTTATGAAAGCGGCTACTATATTATGATACATATGTTGAACATTGTATCTGGTGGTATTATTGATCCATGGAAGAAGAAGGTATTTGGAAATTCAGAACCATTCCATGAGGATGAACTTATAAACGTTCGACAACGTTTTGCTAGTTTTATTCTAGAGTATATTCTATAA 2820 0.428 MKPLPRTRPSPSTGADDGWSEEATFTLIDAWGKLYKTLNPRNLRQYHWKEVAKAVNDNHAFVRKARRSYDQCKSRINALKKRYATEKAKVSDSGDYDYAWPFFEKINSVIGDVLPVKKPSLSPPVVTPVRASAWALAPVGRRSWTQSQSSLKRPAPEITSPSGSLGESRFNRNLAAFAAAAAAAAEEEIDDSNSDNSDSDYLELSNESEKRKRGRNDTEFGHREVASATDKFSEIHERVDASKQRKNVALEKQKMQFSKDSQRMQLHKTNHSKHMDDLLAHSRSGLDTQSTNRKRKRGPTQMKKLALIDGQRIPIEFNQLTDEDVKDDIWTSILEIWDVPNSGFLRKKLMSYVGERWRNFKTHLTSKYVHGDLSDISPLEVYSFLTEEIWEEFVQMRLDPSFQEKRKKAQISSFLNKHPHRLSRGGYELLEEKIMQEKLKQKDESSGDSVIAPPSPPARHEQWKKARQNASGDYITEDTRIIAEKIDSLVEKASQGAFVPQGRKDILAEAIGRPDHSGGVRGVGRGVGIRQYFGPHSREASTPPVFSSEQIETIKVELTQQIREQLIHDLSSMGFSKILPASSPNNIVPACPKGSHSIEPPIPEEDEIPKQCELYVDNLIHAVAFGSVYKLGLTIHNQMLEKDMVRVVVNEVLDANAQVPMPTDEVETVGHALNNFIQWPKRLVQIISDKDADGSGEEDISAKRVDPQLDSVQQLVLKAMCMSESIKLELEHERMKFLWLSQRDIMELCMGKQELSITVLRLWLTYLNRLSINEGKSDLYGFIDPCFIQSPHDPTKAEAYIQNKLYNDKKECYLAPYHNNRHWQLLIVCPKKNHVVFLCSLEKKPDKNIIHTIDTAFERYHKLQGVQKKKPIWNVPVCQRQPGTYESGYYIMIHMLNIVSGGIIDPWKKKVFGNSEPFHEDELINVRQRFASFILEYIL 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01508 939 MobiDBLite consensus disorder prediction 203 247 - -
Vifa1g01508 939 MobiDBLite consensus disorder prediction 187 247 - -
Vifa1g01508 939 Coils Coil 62 89 - -
Vifa1g01508 939 Gene3D - 19 84 - -
Vifa1g01508 939 PANTHER OS10G0338966 PROTEIN-RELATED 326 774 - -
Vifa1g01508 939 Gene3D Adenoviral Proteinase; Chain A 721 938 - -
Vifa1g01508 939 MobiDBLite consensus disorder prediction 438 470 - -
Vifa1g01508 939 Pfam Myb/SANT-like DNA-binding domain 17 108 IPR044822 -
Vifa1g01508 939 SUPERFAMILY Cysteine proteinases 725 937 IPR038765 -
Vifa1g01508 939 MobiDBLite consensus disorder prediction 281 300 - -
Vifa1g01508 939 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01508 Vifa-Chr1 247374305 247379060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01508 8 125 Trihelix Transcription Factor Family AT3G14180 40.833 1.55e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa1g01508 Myb_DNA-bind_4 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01508 - - tpra:123893969 1201.81