Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01506 ATGGAGGAGACACGAGAAGATGCAGGGCCGTCAGAACAAGGGTCATCTAATGTCAACGTATCATGGTGGCCTTCAGATTTTGTTGAAAAATTTGGATCTGTTGCTTTGGATTCACAAGACGAGACAGTAATTAATAAAGAATCTTCTAGATACTCTGACAAAGATGTTTTGTCACCTCTGAAAGCATCACAAACTCTTTGGCGCACTGGAATGCTTTCAGAACCAATACCAAATGGTTTTTATTCAGTCATTCCGGAGACAAGACTCAAAGAACTTTTTGATAGTATTCCTACCTTGGACGAGCTTCATGCTTTGGGCGGAGAGGGTTATAAAGCCGATATCATTCTCGTGGATTTAGAGAAAGATAAAAAGCTATCCATGTTGAAACAACTGATTGTGGCATTAGTTAAAGGATTAAACTCAAATCCAGCTGCAATAATTAAGAAGATAGCTGGATTGGTTTCTGATTTTTATAAGCGACCCAGTGTGGAAAGTCCAGCAAAAGCCGCGTTCGATGAAACCTCTCACATTTTTGAGAATCGAGGCGTCCAGATGCTGGGGCAAATAAAGCATGGTTCATGTCGTCCTCGGGCTATCTTATTTAAAGTATTAGCTGATACTGTAGGTCTTGAAAGCAGACTCATGGTGGGCTTGCCAAATGACAGGGCTGTTGAATGTGTAGATTCATACAAGCATATGTCTGTTATAGTTGTATTAAATTCGGCGGAAATGCTGGTTGACCTTATGCGATTTCCGGGTCAATTGTTACCAAAATCAACAAAGGCAGTTTTTATGAGTCATATACCCGCAGCAGGAGAGAGTGATTCAGCAGAAAATGATTCATGTGATTCGCCGTTAGAACCAAACAGTCCTTTATTTGAAGTTTCAGAGAGGTTAGTTCTCAACAGTGCTGAGAAGGAGGAAAACCTTCAATTCCATAAAAGATTTGATGCGTCTTCAAATGTAACAGGCCTTTCCTTGAGAAATATGATGTTACGAACAAATAGCAGTTTGAGTTTGTCTCATAGTGAACCCAATATTGCAACTGCATTTGGTCGGCGTAGTCGGAGAAAGGTTATTGCTGAACAGAGGACAGCTAGTTCAAGTCCAGAACACCCATCGTTTCGAGCACGTGCACGGTCCATGCTTAGTGGCGATAGGACAGAATTTAGGACAGAATTTAGAGATTTCGCTGATGACCAGGCTACGTCAAGGTCCAGCCATAGATCAGATGGAGCATCCTCATCAGAAGTTCGTAGGATACGACGAAGAAGCATCAGCATTACGCCAGAGATTGGGGATGATATCGTAAGGGCCGTACGTGCAATGAATGAAACACTAAAGCAAAATCGTCTTATGAGAGAGCGAGTGGATCATAATTCATTGTCCCATTCTCCAAACAATATAGTTAGTGATGCAAATCTTCAGAAAAATGTGTCAAATTTCCATCTCGATGGTCATGATGAAAGGCCTAGCTTATACTCTTTTCAGCGTGACCAAGTAACATCACAAAAGGCAATGTCATTACCATCTTCACCACATGACTATAGAAGTCAAGCTTCTGAGAGAAGCGAGCTATCAAGATATGGAGTTAATGATGAAACGGAGTCGACCTGGAATAAAGTACTTGAATCTCAAATGTACAATAACAAACCTTTATTGCCATATGAAGGATGGAATATTGACTTCTCAGAGTTAACTGTTGGAACTCGTGTAGGGATCGGCTTCTTTGGAGAAGTCTTTCGTGGCATATGGAATGGTACAGATGTTGCAATCAAGGTTTTTCTAGAGCAAGATTTAACCGCCGAAAACATGGAAGATTTCTGTAATGAAATATCTATTTTGAGCCGACTCCGACATCCTAATGTTATCTTATTTCTTGGTGCATGCACAAAGCCTCCACGATTATCTATGGTTACGGAATATATGGAGATGGGTTCATTGTATTACTTGATACACGGTCAGAAGAAAAAGCTCAGTTGGCGGAGACGACTAAAGATGATGCGTGACATATGCAAGGGTTTGATGTGCATACACCGAATGAAGATTGTTCACCGTGATTTAAAAAGTGCAAATTGTCTAGTGAACAAGCATTGGACCGTGAAAATATGTGATTTTGGGCTTTCAAGAATAATGATAGAATCTCCAATCAGAGATTCTTCGTCTGCTGGAACTCCAGAATGGATGGCTCCTGAACTCATCCGAAATGAACCATTCAATGAAAAATGCGATATCTTTAGCCTTGGGGTGATACTGTGGGAGCTGTACAACTTGAATAGACCATGGGAAGGCGTACCGCCTGAGAGGGTGGTTTATTCTGTTGCTCATGAGGGTTCCAGATTGGAGGTTCCTGAAGGCCCACTAGGCAGGCTGATTTCAGATTGTTGGGCAGACACACATGAACGGCCAAGTTGTGACGAGATTCTCTCTCGTTTGGTGGACATGGAGTACTCAACGTGTTGA 2463 0.4166 MEETREDAGPSEQGSSNVNVSWWPSDFVEKFGSVALDSQDETVINKESSRYSDKDVLSPLKASQTLWRTGMLSEPIPNGFYSVIPETRLKELFDSIPTLDELHALGGEGYKADIILVDLEKDKKLSMLKQLIVALVKGLNSNPAAIIKKIAGLVSDFYKRPSVESPAKAAFDETSHIFENRGVQMLGQIKHGSCRPRAILFKVLADTVGLESRLMVGLPNDRAVECVDSYKHMSVIVVLNSAEMLVDLMRFPGQLLPKSTKAVFMSHIPAAGESDSAENDSCDSPLEPNSPLFEVSERLVLNSAEKEENLQFHKRFDASSNVTGLSLRNMMLRTNSSLSLSHSEPNIATAFGRRSRRKVIAEQRTASSSPEHPSFRARARSMLSGDRTEFRTEFRDFADDQATSRSSHRSDGASSSEVRRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLMRERVDHNSLSHSPNNIVSDANLQKNVSNFHLDGHDERPSLYSFQRDQVTSQKAMSLPSSPHDYRSQASERSELSRYGVNDETESTWNKVLESQMYNNKPLLPYEGWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLYYLIHGQKKKLSWRRRLKMMRDICKGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIMIESPIRDSSSAGTPEWMAPELIRNEPFNEKCDIFSLGVILWELYNLNRPWEGVPPERVVYSVAHEGSRLEVPEGPLGRLISDCWADTHERPSCDEILSRLVDMEYSTC 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01506 820 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g01506 820 MobiDBLite consensus disorder prediction 396 422 - -
Vifa1g01506 820 Pfam Ethylene-responsive protein kinase Le-CTR1 62 255 - -
Vifa1g01506 820 SMART serkin_6 566 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01506 820 ProSitePatterns Protein kinases ATP-binding region signature. 572 593 IPR017441 GO:0005524
Vifa1g01506 820 Gene3D Phosphorylase Kinase; domain 1 559 644 - -
Vifa1g01506 820 ProSiteProfiles Protein kinase domain profile. 566 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01506 820 CDD STKc_MAP3K-like 572 812 - -
Vifa1g01506 820 MobiDBLite consensus disorder prediction 349 382 - -
Vifa1g01506 820 SUPERFAMILY Protein kinase-like (PK-like) 541 812 IPR011009 -
Vifa1g01506 820 FunFam Serine/threonine-protein kinase isoform 1 556 644 - -
Vifa1g01506 820 MobiDBLite consensus disorder prediction 504 529 - -
Vifa1g01506 820 Pfam Protein tyrosine and serine/threonine kinase 567 812 IPR001245 GO:0004672|GO:0006468
Vifa1g01506 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672|GO:0006468
Vifa1g01506 820 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 366 812 - -
Vifa1g01506 820 Gene3D Transferase(Phosphotransferase) domain 1 645 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01506 Vifa-Chr1 246691582 246725182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01506 1 820 MAP Kinase Kinase Kinase AT3G58640 69.528 0.0 1159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vifa1g01506 PK_Tyr_Ser-Thr 1.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01506 - - gmx:100803469 1421.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01506 1 246691582 246725182 Vifa1g01506 1 246691582 246725182 ECH