Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01505 ATGGAGGAGACACGAGAAGATGCAGGGCCGTCAGAACAAGGGTCATCTAATGTCAACGTATCATGGTGGCCTTCAGATTTTGTTGAAAAATTTGGATCTGTTGCTTTGGATTCACAAGACGAGACAGTAATTAATAAAGAATCTTCTAGATACTCTGACAAAGATGTTTTGTCACCTCTGAAAGCATCACAAACTCTTTGGCGCACTGGAATGCTTTCAGAACCAATACCAAATGGTTTTTATTCAGTCATTCCGGAGACAAGACTCAAAGAACTTTTTGATAGTATTCCTACCTTGGACGAGCTTCATGCTTTGGGCGGAGAGGGTTATAAAGCCGATATCATTCTCGTGGATTTAGAGAAAGATAAAAAGCTATCCATGTTGAAACAACTGATTGTGGCATTAGTTAAAGGATTAAACTCAAATCCAGCTGCAATAATTAAGAAGATAGCTGGATTGGTTTCTGATTTTTATAAGCGACCCAGTGTGGAAAGTCCAGCAAAAGCCGCGTTCGATGAAACCTCTCACATTTTTGAGAATCGAGGCGTCCAGATGCTGGGGCAAATAAAGCATGGTTCATGTCGTCCTCGGGCTATCTTATTTAAAGTATTAGCTGATACTGTAGGTCTTGAAAGCAGACTCATGGTGGGCTTGCCAAATGACAGGGCTGTTGAATGTGTAGATTCATACAAGCATATGTCTGTTATAGTTGTATTAAATTCGGCGGAAATGCTGGTTGACCTTATGCGATTTCCGGGTCAATTGTTACCAAAATCAACAAAGGCAGTTTTTATGAGTCATATACCCGCAGCAGGAGAGAGTGATTCAGCAGAAAATGATTCATGTGATTCGCCGTTAGAACCAAACAGTCCTTTATTTGAAGTTTCAGAGAGTGCTGAGAAGGAGGAAAACCTTCAATTCCATAAAAGATTTGATGCGTCTTCAAATGTAACAGGCCTTTCCTTGAGAAATATGATGTTACGAACAAATAGCAGTTTGAGTTTGTCTCATAGTGAACCCAATATTGCAACTGCATTTGGTCGGCGTAGTCGGAGAAAGGTTATTGCTGAACAGAGGACAGCTAGTTCAAGTCCAGAACACCCATCGTTTCGAGCACGTGCACGGTCCATGCTTAGTGGCGATAGGACAGAATTTAGGACAGAATTTAGAGATTTCGCTGATGACCAGGCTACGTCAAGGTCCAGCCATAGATCAGATGGAGCATCCTCATCAGAAGTTCGTAGGATACGACGAAGAAGCATCAGCATTACGCCAGAGATTGGGGATGATATCGTAAGGGCCGTACGTGCAATGAATGAAACACTAAAGCAAAATCGTCTTATGAGAGAGCGAGTGGATCATAATTCATTGTCCCATTCTCCAAACAATATAGTTAGTGATGCAAATCTTCAGAAAAATGTGTCAAATTTCCATCTCGATGGTCATGATGAAAGGCCTAGCTTATACTCTTTTCAGCGTGACCAAGTAACATCACAAAAGGCAATGTCATTACCATCTTCACCACATGACTATAGAAGTCAAGCTTCTGAGAGAAGCGAGCTATCAAGATATGGAGTTAATGATGAAACGGAGTCGACCTGGAATAAAGTACTTGAATCTCAAATGTACAATAACAAACCTTTATTGCCATATGAAGGATGGAATATTGACTTCTCAGAGTTAACTGTTGGAACTCGTGTAGGGATCGGCTTCTTTGGAGAAGTCTTTCGTGGCATATGGAATGGTACAGATGTTGCAATCAAGGTTTTTCTAGAGCAAGATTTAACCGCCGAAAACATGGAAGATTTCTGTAATGAAATATCTATTTTGAGCCGACTCCGACATCCTAATGTTATCTTATTTCTTGGTGCATGCACAAAGCCTCCACGATTATCTATGGTTACGGAATATATGGAGATGGGTTCATTGTATTACTTGATACACGGTCAGAAGAAAAAGCTCAGTTGGCGGAGACGACTAAAGATGATGCGTGACATATGCAAGGGTTTGATGTGCATACACCGAATGAAGATTGTTCACCGTGATTTAAAAAGTGCAAATTGTCTAGTGAACAAGCATTGGACCGTGAAAATATGTGATTTTGGGCTTTCAAGAATAATGATAGAATCTCCAATCAGAGATTCTTCGTCTGCTGGAACTCCAGAATGGATGGCTCCTGAACTCATCCGAAATGAACCATTCAATGAAAAATGCGATATCTTTAGCCTTGGGGTGATACTGTGGGAGCTGTACAACTTGAATAGACCATGGGAAGGCGTACCGCCTGAGAGGGTGGTTTATTCTGTTGCTCATGAGGGTTCCAGATTGGAGGTTCCTGAAGGCCCACTAGGCAGGCTGATTTCAGATTGTTGGGCAGACACACATGAACGGCCAAGTTGTGACGAGATTCTCTCTCGTTTGGTGGACATGGAGTACTCAACGTGTTGA 2448 0.4167 MEETREDAGPSEQGSSNVNVSWWPSDFVEKFGSVALDSQDETVINKESSRYSDKDVLSPLKASQTLWRTGMLSEPIPNGFYSVIPETRLKELFDSIPTLDELHALGGEGYKADIILVDLEKDKKLSMLKQLIVALVKGLNSNPAAIIKKIAGLVSDFYKRPSVESPAKAAFDETSHIFENRGVQMLGQIKHGSCRPRAILFKVLADTVGLESRLMVGLPNDRAVECVDSYKHMSVIVVLNSAEMLVDLMRFPGQLLPKSTKAVFMSHIPAAGESDSAENDSCDSPLEPNSPLFEVSESAEKEENLQFHKRFDASSNVTGLSLRNMMLRTNSSLSLSHSEPNIATAFGRRSRRKVIAEQRTASSSPEHPSFRARARSMLSGDRTEFRTEFRDFADDQATSRSSHRSDGASSSEVRRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLMRERVDHNSLSHSPNNIVSDANLQKNVSNFHLDGHDERPSLYSFQRDQVTSQKAMSLPSSPHDYRSQASERSELSRYGVNDETESTWNKVLESQMYNNKPLLPYEGWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLYYLIHGQKKKLSWRRRLKMMRDICKGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIMIESPIRDSSSAGTPEWMAPELIRNEPFNEKCDIFSLGVILWELYNLNRPWEGVPPERVVYSVAHEGSRLEVPEGPLGRLISDCWADTHERPSCDEILSRLVDMEYSTC 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01505 815 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g01505 815 MobiDBLite consensus disorder prediction 344 378 - -
Vifa1g01505 815 Pfam Ethylene-responsive protein kinase Le-CTR1 62 255 - -
Vifa1g01505 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 678 690 IPR008271 GO:0004672|GO:0006468
Vifa1g01505 815 MobiDBLite consensus disorder prediction 499 524 - -
Vifa1g01505 815 ProSiteProfiles Protein kinase domain profile. 561 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01505 815 Gene3D Phosphorylase Kinase; domain 1 554 639 - -
Vifa1g01505 815 SUPERFAMILY Protein kinase-like (PK-like) 536 807 IPR011009 -
Vifa1g01505 815 Pfam Protein tyrosine and serine/threonine kinase 562 807 IPR001245 GO:0004672|GO:0006468
Vifa1g01505 815 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 348 807 - -
Vifa1g01505 815 Gene3D Transferase(Phosphotransferase) domain 1 640 814 - -
Vifa1g01505 815 MobiDBLite consensus disorder prediction 391 417 - -
Vifa1g01505 815 ProSitePatterns Protein kinases ATP-binding region signature. 567 588 IPR017441 GO:0005524
Vifa1g01505 815 MobiDBLite consensus disorder prediction 272 291 - -
Vifa1g01505 815 CDD STKc_MAP3K-like 567 807 - -
Vifa1g01505 815 FunFam Serine/threonine-protein kinase isoform 1 551 639 - -
Vifa1g01505 815 SMART serkin_6 561 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01505 Vifa-Chr1 246691582 246725182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01505 1 815 MAP Kinase Kinase Kinase AT3G58640 69.528 0.0 1153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vifa1g01505 PK_Tyr_Ser-Thr 1.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01505 - - gmx:100803469 1427.92