Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01504 ATGGGGGTTGAAGTTTGCATGAATAAACTGTGTAAGGATGGTTCAAGTGGTGAATGGAAGAAAGGGTGGTCTTTGATGTCTGGTGGATTCGCAAAACTCTGCAACAAGTGCGGACTTGCCTATGAGAATTCGGTTTTCTGTGATGTATTCCACCGTCATGAAGCCGGTTGGAGGGAATGCAGCAATTGCAACAAGCCGATTCACTGTGGGTGTATTGTTTCAAGGTCTTTGTTCGAGTACCATGATTCAGGCGGTATAGGCTGTGTTAGCTGCATCAAGATTTCCCATTTTTGTCCGGATACTGAAAAATCTAATAGGTTTACTCTATCGACCAAACACAATGCTAGTGATCGATATGCTGAACGTGCTGGCAAAGGAAACCTATTGCAGTTGTGTAGAACGGCTGAAGTTGGTGAGTCAAGCCGTTGGCCACATGCTCAAAGAGATGGCATGGTTTCATGCAACGGTCCAAAAAGCGGAGAAGTTAAGTGTCAATTCAACAAAGAGGATCGAGGATATTTAAATGTGATGAAGCACTCTAGTCCTTTATCAATGATTACTACATCGAAAAATAACAGACCAACATGGGGGGAGACTAAAAATATAGATGAACTATCGCTGAAGATTTCTCTTTTTCAGCAAGAGCAACAATCTCACCCTTTATTGACTAAGCAAATGAAGAATGGGGCTACGATGAATCTTGAAGCAAATAAAGGTTTGATTTCTCATGAACGCGTTGGCTGGCCACATGCTGATATGAAAGGGAAAAGTCAGTTACTTTCTCGATACTGGCCAAGGATTACTAACCAAGAATTGGAGAAGTTGTCTGGAGATTTGAAGTCTACTATAGTGCCCTTATTTGAGAAGGTGTTAAGTCCGAGTGATGCGGGTCGAATTGGCCGCCTTGTTCTCCCAAAAGCGTGTGCTGAGGCTTTTCTTCCTCCTATTTCGCAATCAGAAGGTGTTCCATTACAGTTCCAAGATTTGAAAGGGAACGAGTGGACTTTTCAGTTCCGGTTTTGGCCCAATAACAACAGTAGAATGTATGTATTGGAGGGTGTGACTCCTTGCATACAGGCGTTGCAATTAAACGCCGGTGATACTGTGACATTTAGTCGGATAGAACCTGGAGAAAAATTTGTACTCGGTTTTAGAAGGGCTACGAACTCTATTGATACACAGGATGCCGCTGCATCAGCTCATTCAAACGGAATTTTGACGAAGGACGCAAACCTTTCTGGTGGAACTAACATTTTGAACTCATTAGAAAAGAAAAAGACTCGTAACATTGGGCCGAAAACCAAGAGGTTGCACATTCGTAGTGAAGATTCTATAGAGTTGAGACTTACATGGGAAGAAGCACAAGACTTTCTTTGTCCTCCGCCTAGTGTCAAGCCGAATCTTGTGACCATCGAGGACCAAATATTCGAAGAATATGATGAACCACCGGTCTTCGGGAGGAGAACTATAACCAGTACTTGTCAATCTTCTGCATCAGAGCAGCTCAGTCCAAAAGAAAAAGAAAATCTTCTGCGAACCAGGAAAGTTTCTAAAAAGAGAAAAATTGTCGAAAAGAGTAAGTCGATGGAGCAAGACAAGCTTTCAAGTCTAGAAGCTCTTGCAAGTGCAGCAATTTTAGGAGACAATCTTGCTGGACCCGGCGAGTCATCATCAGCTGGAGCAACCACCAAACACCCGAGGCATCGTCCTGGATGCAGTTGCATCGTGTGCATTCAACCACCGAGCGGACAAGGAAAACATAAGCCAACATGCACTTGTGTTCCCTGCGAGACTGTGAAGCGTCGGTTCAATACCTATATGATGCGTAGGAAGAAAAACAAATCAGAATCATCTGAAGCAGCTGCTTTCCAGAATGATCAAATGAATAGTAGAGATGAAGCAGATACCAGTGGCGGCGCATCAGGACAAGATACAAGCCACTCATCGGACGAGGGAAGCCTAAATGAAGGTCAGCTCGAGGTTGTTGAACCGAATGTGGCGGGACAGTTAGATCTGAATTGTCATCCCAATCATGAAGATATGGAAATGGATACATGTGACAAGACAGATTATGACTAA 2079 0.4353 MGVEVCMNKLCKDGSSGEWKKGWSLMSGGFAKLCNKCGLAYENSVFCDVFHRHEAGWRECSNCNKPIHCGCIVSRSLFEYHDSGGIGCVSCIKISHFCPDTEKSNRFTLSTKHNASDRYAERAGKGNLLQLCRTAEVGESSRWPHAQRDGMVSCNGPKSGEVKCQFNKEDRGYLNVMKHSSPLSMITTSKNNRPTWGETKNIDELSLKISLFQQEQQSHPLLTKQMKNGATMNLEANKGLISHERVGWPHADMKGKSQLLSRYWPRITNQELEKLSGDLKSTIVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPPISQSEGVPLQFQDLKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQALQLNAGDTVTFSRIEPGEKFVLGFRRATNSIDTQDAAASAHSNGILTKDANLSGGTNILNSLEKKKTRNIGPKTKRLHIRSEDSIELRLTWEEAQDFLCPPPSVKPNLVTIEDQIFEEYDEPPVFGRRTITSTCQSSASEQLSPKEKENLLRTRKVSKKRKIVEKSKSMEQDKLSSLEALASAAILGDNLAGPGESSSAGATTKHPRHRPGCSCIVCIQPPSGQGKHKPTCTCVPCETVKRRFNTYMMRRKKNKSESSEAAAFQNDQMNSRDEADTSGGASGQDTSHSSDEGSLNEGQLEVVEPNVAGQLDLNCHPNHEDMEMDTCDKTDYD 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01504 692 Gene3D - 265 392 IPR015300 -
Vifa1g01504 692 MobiDBLite consensus disorder prediction 618 655 - -
Vifa1g01504 692 SMART B3_2 287 388 IPR003340 GO:0003677
Vifa1g01504 692 Pfam B3 DNA binding domain 287 387 IPR003340 GO:0003677
Vifa1g01504 692 FunFam B3 domain-containing transcription repressor VAL1 265 392 - -
Vifa1g01504 692 CDD B3_DNA 285 386 IPR003340 GO:0003677
Vifa1g01504 692 MobiDBLite consensus disorder prediction 675 692 - -
Vifa1g01504 692 SUPERFAMILY DNA-binding pseudobarrel domain 284 389 IPR015300 -
Vifa1g01504 692 ProSiteProfiles B3 DNA-binding domain profile. 287 388 IPR003340 GO:0003677
Vifa1g01504 692 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 684 - -
Vifa1g01504 692 MobiDBLite consensus disorder prediction 609 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01504 Vifa-Chr1 246396581 246400951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01504 3 663 B3 DNA Binding Superfamily AT4G32010 41.957 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa1g01504 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01504 K09287 - psat:127118438 1233.01