Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01501 ATGCAACACCCATCTTCAAACCCTAATCCCAGTTCCATTCCCAATCCCCACAATGCAACCACCGCATCCAAATTCCCCCCACCGCCACTTCCATCCACGGCGGCGACAACCGCCGCCTGCAAGTCCTCCATGTTCCCCCGCTCCGGCGGAAATAATGGGTCCCATCACCGGAGAGCTCACTCAGAGGTCAGTTTCCGGTTACCCGACGACATGATGGACTTGTCTCCGTCCGATCCGTTCACGGGCGGATCTTCGACGGCGAGCCTAGATGAGATCGGATCCGAGGACGACCTGTTCTCGACGTACATTGACATGGATAAGCTTGGAGGTTCGAATGATTTGGGAGACGGTGGAGTAGATCCGGTGAGAAATGATGAGACGGAGAAGAACCAAGGGAGGGCGAGGCATAGGCATAGTAGCTCGGTGGATGGTTCTTCGTCGTTTGGGGAGATTATGGATGGGAAGAAAGCTATGCCTCCAGATAAGTTAGCTGAGCTTTGGTCTATTGATCCCAAGCGTGCAAAAAGAATACTTGCGAATCGACAATCTGCTGCTCGTTCAAAGGAGAGAAAGGCCCGCTATATACATGAACTAGAGCGCAAAGTTCAGACCCTACAGACTGAAGCTACAACTCTTTCTGCCCAACTCACATTATACCAGAGAGATACAACAGGTCTGAGTAATGAAAATACAGAGCTTAAACTTCGTCTGCAAGCCATGGAGCAACAAGCACATCTCCGTGATGCTCTTAATGATGCCTTGAAGAAAGAAGTTGAGAGACTGAAGGTTGCTACTGGAGATATAATGAGCCACACTGAATCTTTCAATCTTGGTATGCGCCAGATGCCATTTACGGAATCGAATTTCCTTCCCATTTCACCACAATCAGGACTTGATATTAGCAGCAAAGGAACAACCGTTGTTAAGTCTGAAGACCCCTCTCTTTCTGCAAGTGAGAGTAGCACTACATTTTGA 975 0.4913 MQHPSSNPNPSSIPNPHNATTASKFPPPPLPSTAATTAACKSSMFPRSGGNNGSHHRRAHSEVSFRLPDDMMDLSPSDPFTGGSSTASLDEIGSEDDLFSTYIDMDKLGGSNDLGDGGVDPVRNDETEKNQGRARHRHSSSVDGSSSFGEIMDGKKAMPPDKLAELWSIDPKRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTTGLSNENTELKLRLQAMEQQAHLRDALNDALKKEVERLKVATGDIMSHTESFNLGMRQMPFTESNFLPISPQSGLDISSKGTTVVKSEDPSLSASESSTTF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01501 324 MobiDBLite consensus disorder prediction 35 50 - -
Vifa1g01501 324 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 170 233 IPR004827 GO:0003700|GO:0006355
Vifa1g01501 324 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g01501 324 SMART brlzneu 168 232 IPR004827 GO:0003700|GO:0006355
Vifa1g01501 324 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 18 279 - -
Vifa1g01501 324 CDD bZIP_plant_RF2 173 222 IPR044759 GO:0003700|GO:0006355
Vifa1g01501 324 MobiDBLite consensus disorder prediction 1 93 - -
Vifa1g01501 324 Coils Coil 223 243 - -
Vifa1g01501 324 MobiDBLite consensus disorder prediction 110 155 - -
Vifa1g01501 324 Gene3D - 171 223 - -
Vifa1g01501 324 Coils Coil 188 215 - -
Vifa1g01501 324 Pfam bZIP transcription factor 172 226 IPR004827 GO:0003700|GO:0006355
Vifa1g01501 324 SUPERFAMILY Leucine zipper domain 172 223 IPR046347 GO:0003700|GO:0006355
Vifa1g01501 324 MobiDBLite consensus disorder prediction 301 324 - -
Vifa1g01501 324 MobiDBLite consensus disorder prediction 119 140 - -
Vifa1g01501 324 FunFam probable transcription factor PosF21 171 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01501 Vifa-Chr1 246058303 246060866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01501 6 282 bZIP Transcription Factor Family AT2G40620 58.188 2.84e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g01501 bZIP_1 6.6e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01501 - - vra:106763153 409.453