Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01498 ATGGCGAACAAGCTCATCAACCAGATGGGTTTACCTAAATCCATCGCTAACATCTTCACCGCTCGCAACATCATCACCGCCAAGGATGCATTATCTTTGACTGAATTTGAATTGATGGAGTTGTTGGATGTTGGGATGGCAGAAGTAGCATATGCAATGGCGCACATTAGCGAAGTCGTGTGTCCACCTTGTCAAACTGCGTTACTTCTGATGGAGCAACGAGTACGAAATGAAAGCTTGGCTGGTCATCTTCCCACTCGTTTGAAAGGGCTGGATGAAGCTTTATGCGGTGGTATACCATTTGGTGTTTTGACAGAATTGGTTGGTCCACCAGGAATTGGAAAAACACAGTTTTGCTTGAAGCTCTCATTGTTGGCTTCGTTACCGGCAAATTTTGGAGGCTTAGATGGCCGGGTGATATATATTGACGTTGAATCTAAATTTAGTTCAAAAAGATTGATAGAGATTGGAACAAAGAGTTTTCCTGAAATATTTCACAAGAAGGGAATGGCACAGGAGATGGCCGGTAGAATCCTGATCTTGCGTCCTACATCACTTTCTGAATTTGCTGAGAGTTTGCACCGGATCAAAGTATCACTCCTCCAGCAACAAGTGAAGTTGCTTATCATTGATAGCATGGCTGCTCTCGTTTTAGGTGAACATGATTGCGGGGCTTCTAGGCAACAAGCATTGGGTTGGCACGTCTCTTTTATCAAGTCACTTGCTGAATTTTCACGAATTCCAATTGTATTGACAAATCAAGTAAGATCTCAAATGGGTGATGAATCTCTCATGTATTCCTTTCAAGCAGCTCAAAGCCGCCCTACAAAAGAAGACATTCCCGTTACATTTGACTCTCATCTTGTTGCTGCTTTGGGAATTAATTGGGCTCATGCCGTGACCATCCGTCTTGTACTTGAATCCAAATCAGGTCAAAGGTTTATTAAGCTGGCGAAATCTCCAATTTCACCACCTTTGGCTTTCCCTTTTGACATTACTTCATCAGGGATTGTTTTGCTTGATGATAATGGGATAGAGATGAAAGGGCCAGAAATAAACAATATTCACTGCCAAGGCCCAAATGCGTTGTTAAATTTTTAA 1101 0.4233 MANKLINQMGLPKSIANIFTARNIITAKDALSLTEFELMELLDVGMAEVAYAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPPGIGKTQFCLKLSLLASLPANFGGLDGRVIYIDVESKFSSKRLIEIGTKSFPEIFHKKGMAQEMAGRILILRPTSLSEFAESLHRIKVSLLQQQVKLLIIDSMAALVLGEHDCGASRQQALGWHVSFIKSLAEFSRIPIVLTNQVRSQMGDESLMYSFQAAQSRPTKEDIPVTFDSHLVAALGINWAHAVTIRLVLESKSGQRFIKLAKSPISPPLAFPFDITSSGIVLLDDNGIEMKGPEINNIHCQGPNALLNF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01498 366 PIRSF Rad51 1 343 IPR016467 -
Vifa1g01498 366 ProSiteProfiles RecA family profile 1. 80 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vifa1g01498 366 CDD Rad51B 92 322 - -
Vifa1g01498 366 SMART AAA_5 101 276 IPR003593 GO:0016887
Vifa1g01498 366 FunFam DNA repair protein RAD51 homolog 2 63 338 - -
Vifa1g01498 366 PANTHER DNA REPAIR PROTEIN RAD51 HOMOLOG 2 1 364 IPR030548 GO:0000724|GO:0003677|GO:0006281|GO:0033063
Vifa1g01498 366 Gene3D - 63 338 IPR027417 -
Vifa1g01498 366 Pfam Rad51 84 338 IPR013632 -
Vifa1g01498 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 340 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01498 Vifa-Chr1 245500802 245506291 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01498 K10869 - gmx:100789073 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01498 1 245500802 245506291 Vifa6g00743 6 264592617 264593775 PCT