Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01494 ATGTTAGATTTTAATCTGAATGCTGAGTTGACTCAGAATGATGACTCGATCATGCTACTGGAAAAACTTCCAGAAGCTTCTTCAGGAACTTCGAATTCCTCAATCGTGAATGCGGAGGGGCCAAGTAACATCACCGGAGACGAAGACTCGTGTTCAACACGCGCCGGCGATGTTTTCACCTTCAAATTCGGTATACTTAAGGTGGAAAAAGGAACCGACGCTGTTGCGACGAAAGAGCTGTTTCCCGTGTGTGGAGGGGACTGGCCGCAGGGGGAGACTTCGACGATGCTGATTCCGGCGAGGAAGAGCGTGATGGATCTTTCACTTGATCAACGTATTGGAGGTGAAAATGGAGTTGTTCAGGTTCCGCAACGGCCGCAGGTGAAGAAGAGTAGGAGAGGACCGAGGTCTCGAAGCTCTCAGTACAGAGGAGTCACGTTCTACAGAAGAACTGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCTAGAGCTTATGATCGAGCTGCTATAAAGTTCAGGGGACTTGATGCTGACATTAATTTCAATCTAGTTGAATATGAGGAAGATATGAATCAGATGAAGAATCTTTCAAAGGAGGAATTTGTGCACATACTCCGTCGCCACAGTAATGGTTTCTCAAGGGGAAGTTCGAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAACTCCTTGGAAAAAAGTATGTATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCCGCTATCAAGTGTAATGGAAGAGAGGCTATGACAAACTTTGAGCCAAGTACATATGAAAGTGAGATCAAAACTGAAGCTATCAATGAAGGTGGAAGTCACAATCTTGACCTCAATTTAGGCATAGCAACTCCAGGACATGAACCCAAAGAAAACAGAGGGTATCCTCTGTTTCAGACCGCCCCTTACAATCTGCATCCCGGAAGGAATTTGAAGATGGAGACTAGTGCTAACTCAGTTATTAGTGACCTGTCTTCGAAAAAGCTGGTTGTAACTGAACAGCGTCCTTCCATGTGGAATACCACGTATTCTAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATTGGCATTGATCCTTCAAAAGGACCTCCCTACTGGGCATGGCAAGCACATAGTCAGGGCACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCTATTTCAGCTACCTTTCCGCCAAATTCCATCTTTCAAACACAACCTATGAACTCAATTCCACTTCGTTTCACTCAATCTATAGCACCTGGTAGCAGTGCATCTCAATACTATTATCAGGTGAAGTCCTCCCAGGCACCACCGTAG 1425 0.4568 MLDFNLNAELTQNDDSIMLLEKLPEASSGTSNSSIVNAEGPSNITGDEDSCSTRAGDVFTFKFGILKVEKGTDAVATKELFPVCGGDWPQGETSTMLIPARKSVMDLSLDQRIGGENGVVQVPQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDSEVEAARAYDKAAIKCNGREAMTNFEPSTYESEIKTEAINEGGSHNLDLNLGIATPGHEPKENRGYPLFQTAPYNLHPGRNLKMETSANSVISDLSSKKLVVTEQRPSMWNTTYSSFFPNEERAERIGIDPSKGPPYWAWQAHSQGTASPVPQFSTAASSGFSISATFPPNSIFQTQPMNSIPLRFTQSIAPGSSASQYYYQVKSSQAPP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01494 474 PRINTS Ethylene responsive element binding protein signature 272 292 IPR001471 GO:0003700|GO:0006355
Vifa1g01494 474 PRINTS Ethylene responsive element binding protein signature 234 245 IPR001471 GO:0003700|GO:0006355
Vifa1g01494 474 FunFam AP2-like ethylene-responsive transcription factor 140 199 - -
Vifa1g01494 474 CDD AP2 141 196 IPR001471 GO:0003700|GO:0006355
Vifa1g01494 474 Pfam AP2 domain 232 282 IPR001471 GO:0003700|GO:0006355
Vifa1g01494 474 Pfam AP2 domain 141 189 IPR001471 GO:0003700|GO:0006355
Vifa1g01494 474 SUPERFAMILY DNA-binding domain 140 197 IPR016177 GO:0003677
Vifa1g01494 474 Gene3D AP2/ERF domain 140 199 IPR036955 GO:0003700|GO:0006355
Vifa1g01494 474 Gene3D AP2/ERF domain 232 291 IPR036955 GO:0003700|GO:0006355
Vifa1g01494 474 SUPERFAMILY DNA-binding domain 232 291 IPR016177 GO:0003677
Vifa1g01494 474 MobiDBLite consensus disorder prediction 27 49 - -
Vifa1g01494 474 ProSiteProfiles AP2/ERF domain profile. 141 197 IPR001471 GO:0003700|GO:0006355
Vifa1g01494 474 FunFam AP2-like ethylene-responsive transcription factor 232 292 - -
Vifa1g01494 474 ProSiteProfiles AP2/ERF domain profile. 233 290 IPR001471 GO:0003700|GO:0006355
Vifa1g01494 474 CDD AP2 232 292 IPR001471 GO:0003700|GO:0006355
Vifa1g01494 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 111 323 - -
Vifa1g01494 474 SMART rav1_2 141 203 IPR001471 GO:0003700|GO:0006355
Vifa1g01494 474 SMART rav1_2 233 296 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01494 Vifa-Chr1 244317224 244320613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01494 50 316 AP2-EREBP Transcription Factor Family AT4G36920 60.279 9.55e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa1g01494 AP2 1.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01494 K09284 - gmx:100777102 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01494 1 244317224 244320613 Vifa1g01494 1 244317224 244320613 ECH
Vifa1g01494 1 244317224 244320613 Vifa6g00667 6 246636827 246640080 PCT