Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01490 ATGTTTTGTAAGAGAGAGAAGAACATGGAGGATTTTAAGGATGAGAAATGTTATGTGGAAACTGATCCAACTGGTCGTTATGGCAGGTTTGGAGATGTACTTGGGAAAGGGGCAATGAAGACAGTGTACAAAGCAATTGATGAGGTACTTGGAATAGAGGTAGCATGGAACCAAGTGAGGCTCAATGAGGTACTTAATACGCCGGACGATTTGCAGCGTCTTTACTCGGAGGTTCATCTTCTGAGCACGCTCAAGCATCGGTCGATTATGCGATTCTACACGTCTTGGATTGATATTGATAACAAGGCTTTCAATTTCATTACAGAAATGTTCACATCAGGATCACTCAGAGAATACCGGAAGAAGTATAAGCGAGTAAGCTTACAAGCAATAAAGAGTTGGGCGCGCCAGATTTTACATGGTCTAGTTTTTCTACATGAACATGATCCACCTGTTATCCATAGGGACCTGAAATGTGATAACATATTTGTGAATGGCCATCTTGGACAAGTGAAAATTGGTGATCTTGGACTAGCTGCAATTCTTCAAGGCTCTCAATCAGCTCATAGTGTTATAGGTACACCTGAGTTCATGGCACCGGAAATGTACGAGGAAGAGTACAATGAACTTGCTGATGTTTACTCATTTGGCATGTGTGTGTTGGAAATGCTCACTTCTGATTATCCGTATAGCGAATGTACTAATCCAGCACAGATTTACAAGAAAGTGACATCGGGGAAGCTACCAATGTCTTTTTTCTGCATCGAAGACACGGAAGCTCGGAGATTCATTGGAAAATGTTTAGAACCTGCGGAAAAGAGACCTTCTGCGAAAGAGTTGTTGCTTGAGCCTTTTCTTTTGGCCGATGATTTATCGTCGGCTAAGAAGTTGGCAATTCAGAAACCATTTTTGAATGACAGTGAAATGGAGAAGCCTCGACTGAGTGATGAATTTCCTAGGACTGATATGAAAGTAATTGGAAAGTTGAATCCCGAAGACGAAACTATCTTTCTCAAAGTGCAAATTTCTGATAAGAATTGTTCTGTTAGAAATGTATATTTTCCATTTGATATTCACACTGATACACCAATTGATGTTGCAATGGAGATGGTAAAAGAATTGGAGATTTCTGATTGGGATCCTTATGATATTGCGAATATGATCAATAGAGAGATATCTGCTCTTTTGCCATATAGATGGAAAAATGAAAGTGCAGATTCCTTCCAAACATTCAGTTACCAAAATGACGATGTCGAAGAACACCGTCTTCATTTCCGCTCAATCTCGTCTTGTTCATCGTTACAAGAATCAATACCGGATTCAGCCAGTAAAGCTGAGGAAATATCGCGCGGTTATTATTTACTTCATGATGATTTGCATGATGACAACAGTTCAAGATGTTCTTCACAAGGGACATATTCAAATTGGAACTACTATTCTATGGATGATCATGAACACAATGTGGCTTCAATCCGAAAAGACTATAACCTTCCCAACATGAAGAGTCACAAGGGCACAAGATTTTCACCTGGTGAAGAGTTGAGCCATTGCAACCAGTGTAAAATTTTAGGAGGATCACAGAATCCTTCACCTGGTAAAAGTAAGATGATGATGGAAAATCGAAAACTGACACGGAACAGGTCATTGATCGATACACGGAGCCAATTGTTACACAGATCATTGGTTGATGAATTGAACAAAAGAAGACAATTCAAGACTGTGGGAGCTGTGGAGAATATTGGATTTCAGTCACCTTATGATGATTCTATATAA 1773 0.3965 MFCKREKNMEDFKDEKCYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVRLNEVLNTPDDLQRLYSEVHLLSTLKHRSIMRFYTSWIDIDNKAFNFITEMFTSGSLREYRKKYKRVSLQAIKSWARQILHGLVFLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILQGSQSAHSVIGTPEFMAPEMYEEEYNELADVYSFGMCVLEMLTSDYPYSECTNPAQIYKKVTSGKLPMSFFCIEDTEARRFIGKCLEPAEKRPSAKELLLEPFLLADDLSSAKKLAIQKPFLNDSEMEKPRLSDEFPRTDMKVIGKLNPEDETIFLKVQISDKNCSVRNVYFPFDIHTDTPIDVAMEMVKELEISDWDPYDIANMINREISALLPYRWKNESADSFQTFSYQNDDVEEHRLHFRSISSCSSLQESIPDSASKAEEISRGYYLLHDDLHDDNSSRCSSQGTYSNWNYYSMDDHEHNVASIRKDYNLPNMKSHKGTRFSPGEELSHCNQCKILGGSQNPSPGKSKMMMENRKLTRNRSLIDTRSQLLHRSLVDELNKRRQFKTVGAVENIGFQSPYDDSI 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01490 590 CDD STKc_WNK 26 286 - -
Vifa1g01490 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vifa1g01490 590 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
Vifa1g01490 590 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Vifa1g01490 590 FunFam Probable serine/threonine-protein kinase WNK1 13 109 - -
Vifa1g01490 590 SUPERFAMILY Protein kinase-like (PK-like) 29 287 IPR011009 -
Vifa1g01490 590 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 474 - -
Vifa1g01490 590 Pfam Protein kinase domain 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01490 590 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01490 590 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01490 590 Gene3D Transferase(Phosphotransferase) domain 1 111 292 - -
Vifa1g01490 590 Gene3D - 328 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01490 Vifa-Chr1 243864811 243867643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01490 18 586 MAP Kinase Kinase Kinase AT5G58350 58.014 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa1g01490 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01490 K08867 - gmx:100272203 895.19