Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01489 ATGGGAAATAACAAGTTCAAATTTTCAGATATGATACCAAATGCTTGGTTTTACAAGCTAAAAGATATGAGCAAATCATCAAGGAAAAGAAATGGTTCATCACATTTTATGAAGAACAAAGTAATAACTTCACCAACATCAACATCTCAAAGGTCACAAAATTCAAGGTATTCTTCACATTATATCTCAAATGAACCAATAAGGGTTGGTAAGTTATTTAACAAACCAAATCATACCAAAGATTTGAACTTTCCATTCAATGATTCACCAAGAATGTCTTCAAAGAGAAGGGTTGGAAGAAAAACTATTTACAAGCCTTCTCATTCTTCTCAACCATTTGAACAAGTTCAAGTTCAATTACAAGAACATGATTTGTCTTCAATTGAAAATTCTTCTAGTGAGTCTTATCATAATCAATGTGTTTCTTCTGAATCTGAATTTTGTGATAGCTTTTCGGTTCCGGATTTGCTTAATTGTAGTTGTAGAGTTAGCTCTTCAACTAATGATATCATCATAGACATGAACAATGAATCTTTTCAAGGAAATCCTAAGCACTTGGATGGTTTTGAGTCTTTTGATGCATTTTCACAACTTGGTCTAGCTCCAATATTAACAAAGCAAGTGAAGTTCGACGATGATAACATCGTCGAGGCTACTAAATCTCGAACCTCGACTGAATCAGACGAGCAACAAATCGATCATTCTTTCTCGACGAAAGTAAATCAAAGAAGGAAAAGAAAAAGTCAAATAGGTAAAAAAGCTTCTCCTAACTCTTCTCAAGGTATAAGGCTTAGAGTGAATTCTCCAAAACTTGTTAATAGAAAAATTCAAGCTAGTGGAAGAAAGAGTGTTTCAAGGAATGATGCAGGGTTTGTAGATGGATTTGCTGTTGTTAAGTCTTCAATTGATCCAATAAGTGATTTCAAGGAATCAATGGTGGAAATGATTGTTGAGAATAATATAAGAGGGTCAAAGGAGTTGGAGAATTTACTTGCTTGCTATCTTTCTCTTAATTCAAGTGAATATCATGATCTTATTGTTAAAGCTTTTGAGCAAATTTGGTATGATATGGCTCAACTTAGAATGTAA 1089 0.3315 MGNNKFKFSDMIPNAWFYKLKDMSKSSRKRNGSSHFMKNKVITSPTSTSQRSQNSRYSSHYISNEPIRVGKLFNKPNHTKDLNFPFNDSPRMSSKRRVGRKTIYKPSHSSQPFEQVQVQLQEHDLSSIENSSSESYHNQCVSSESEFCDSFSVPDLLNCSCRVSSSTNDIIIDMNNESFQGNPKHLDGFESFDAFSQLGLAPILTKQVKFDDDNIVEATKSRTSTESDEQQIDHSFSTKVNQRRKRKSQIGKKASPNSSQGIRLRVNSPKLVNRKIQASGRKSVSRNDAGFVDGFAVVKSSIDPISDFKESMVEMIVENNIRGSKELENLLACYLSLNSSEYHDLIVKAFEQIWYDMAQLRM 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01489 362 Pfam DNA-binding domain 1 41 IPR025830 GO:0003677
Vifa1g01489 362 ProSiteProfiles OVATE domain profile. 297 356 IPR006458 -
Vifa1g01489 362 NCBIfam uncharacterized plant-specific domain TIGR01568 295 357 IPR006458 -
Vifa1g01489 362 MobiDBLite consensus disorder prediction 24 61 - -
Vifa1g01489 362 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 119 357 IPR038933 GO:0045892
Vifa1g01489 362 MobiDBLite consensus disorder prediction 220 263 - -
Vifa1g01489 362 Pfam Transcriptional repressor, ovate 301 357 IPR006458 -
Vifa1g01489 362 MobiDBLite consensus disorder prediction 36 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01489 Vifa-Chr1 243840110 243841198 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vifa1g01489 Ovate 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01489 - - cam:101489571 437.573