Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01482 ATGGAACGCTTCATTGACAACTTGCCGCCGATGGATCTGATGCGATCGGAGAAGATGACGTTTGTTCAACTCATCATCCCGGCCGAGTCTGCTCAGCGTGCCGTTTCGTATTTAGGCGAACTCGGTCTTCTTCAATTCAGAGACTTAAATGCTGACAAAAGTCCTTTCCAGAGAACGTTCGTTAATCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGTTTTTTTAAGGATCAAATCAATAAAGCTGGTCTAATATCGCCTTCTCGTACTCTATTGCAACCGGACATAGACTTGGAGGATTTAGAGGCACATCTTGCTGAGCATGAACACGAGCTAATTGAAATGAACTCTAATAGTGACAAGCTTCGGCAATCATATAACGAACTTCTGGAATTCAAGATTGTTTTACAGAAGGCATGCAGCTTTCTTATTTCTAGTCATGGTCGTGCTATTTCAGACGAGGTAGAACTACAAGATAATATATACTCAAATGATGACTATGTTGAATCATCATCTTTGCTTGATCAGGAAATGAGACCCGAACCATCAAATACGTCTGGTTTAAGGTTTATCAGTGGGATAATTTGTAAATCCAAGGCTCTTAGGTTTGAAAGGATGTTATTTCGTGCTACAAGAGGCAATATGCTTTTCAATCATGCACCAGCTGGTGAACAAATCATGGATCCTGTTACAACTGAGATGATTGAGAAAACAGTATTCGTTGTGTTTTTCTCTGGGGAACAGGCAAGAACAAAAATTCTGAAAATTTGCGAGGCATTTGGTGCAAATTGTTATCCTGTGCCTGAAGATATAAGCAAACATGGGCAAATAACTAGGGAGGTTACATCACGCCTTACTGATTTAGAGGCAACTTTGGATGCTGGGATTAGGCACCGGAACAAAGCACTAGCTTCTATAGCAGACCATCTAGCAAAATGGATGGACCTGGTAAGAAGAGAGAAGGCTGTGTATGATACACTGAACATGTTAAATTTTGATGTCACAAAAAAATGTCTTGTTGGAGAGGGATGGTGCCCTATGATTGCAAAAACACAGATGCAAGAGGCACTGCAACGTGCAACTTTTGATAGCAATTCTCAAGTTGGCATAATTTTCCATCAAATGGATGCAGTGGAATCACCACCTACATATTTTAAGACCAACAGTTTCACAAACCCTTATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATACCAAGAAGCAAATCCCGCAGTTTACACAACTGTTGTATTCCCCTTCCTATTCGCAATGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTAATTCTTATATCACGTGAAAACAAGCTCAGTACACAGAAGCTTGGAAGCTTCATGGAGATGCTATTTGCATTTCATTGCCGGGATACTTCATGCAGGGATGCCCATACCATTGGCTTAGTCAAATACCGTGATCCATACCCATTTGGTGTGGATCCTAGCTGGCGTGGAAGTCGTACAGAATTATCTTTTCTGAACTCTATGAAGATGAAGATGTCCATTCTGTTTGGTGTGGCACATATGAACTTGGGAATTATATTAAGTTATTTCAATGCTCGTTTCTTTGGAAGTTCATTGGATATAAGGTACCAATTTGTGCCACAGATGATTTTCCTTAACAGTCTCTTTGGATATCTTTCCCTTCTCATTATTGTTAAGTGGTGTACTGGCTCTCAAGCAGACCTTTATCATGTGATGATATATATGTTTTTAAGCCCTACAGACGAACTTGGTGAAAATCAGTTGTTTTGGGGCCAAAGACCACTTCAAATTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCGAAACCTTTTATACTAAAAAAGCTTCATACTGAGCGATTTCAAGGCCGTAGTTATGGTATTTTGAATAGTTCTGAAATGGATCTTGAAGTGGAGCCAGATTCTGCCAGGGAACATCATCATGAAGAGTTCAATTTCAGTGAGGTTTTTGTTCACCAAATGATTCATTCCATCGAGTTTGTTTTAGGTTCAGTTTCTAATACGGCGTCATATCTTCGACTGTGGGCATTAAGTTTGGCTCATTCAGAACTTTCTACAGTTTTCTATGAGAAAGTGTTGCTTCTTGCTTGGGGGTATGACAATCTCATCATTCGTTTAGTAGGGCTAACAGTTTTTGCCTTTGCAACTGCCTTTATACTACTTATGATGGAGAGTCTCAGTGCTTTTCTTCACGCCCTGCGGCTTCACTGGGTAGAATTTCAAAATAAATTCTACCATGGTGATGGCTACAAGTTCAAGCCTTTTTCATTTGCTTCTTTAACAGAGGATGATGATTGA 2361 0.4024 MERFIDNLPPMDLMRSEKMTFVQLIIPAESAQRAVSYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGLISPSRTLLQPDIDLEDLEAHLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACSFLISSHGRAISDEVELQDNIYSNDDYVESSSLLDQEMRPEPSNTSGLRFISGIICKSKALRFERMLFRATRGNMLFNHAPAGEQIMDPVTTEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKHGQITREVTSRLTDLEATLDAGIRHRNKALASIADHLAKWMDLVRREKAVYDTLNMLNFDVTKKCLVGEGWCPMIAKTQMQEALQRATFDSNSQVGIIFHQMDAVESPPTYFKTNSFTNPYQEIVDAYGVARYQEANPAVYTTVVFPFLFAMMFGDWGHGICLLLGALILISRENKLSTQKLGSFMEMLFAFHCRDTSCRDAHTIGLVKYRDPYPFGVDPSWRGSRTELSFLNSMKMKMSILFGVAHMNLGIILSYFNARFFGSSLDIRYQFVPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDELGENQLFWGQRPLQIVLLLLAVIAVPWMLFPKPFILKKLHTERFQGRSYGILNSSEMDLEVEPDSAREHHHEEFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLVGLTVFAFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASLTEDDD 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01482 786 PIRSF ATP6V0A1 466 786 IPR026028 GO:0000220|GO:0046961
Vifa1g01482 786 PIRSF ATP6V0A1 9 470 IPR026028 GO:0000220|GO:0046961
Vifa1g01482 786 Pfam V-type ATPase 116kDa subunit family 483 778 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vifa1g01482 786 Pfam V-type ATPase 116kDa subunit family 37 466 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vifa1g01482 786 Coils Coil 100 127 - -
Vifa1g01482 786 PANTHER VACUOLAR PROTON ATPASES 13 466 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01482 Vifa-Chr1 243001854 243011585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01482 1 779 Primary Pumps ATPases(2) AT2G28520 76.319 0.0 1274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01482 K02154 - gmx:100776037 1402.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01482 1 243001854 243011585 Vifa1g01482 1 243001854 243011585 ECH
Vifa1g01482 1 243001854 243011585 Vifa6g00657 6 244545573 244559812 PCT