Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01479 ATGAAATCATATGTGAGTTTCAAAGATGAAAGCCCTTCTGGTGGAGTTACCAATCATCTCTCCAATGAACATGAGATGCTGTCTGGAGATACAATTTTCAACATCAAACGCCTGATTGGGAGAGTTGACACTGACCCGGTTGTTCGTGCGAGTAAAAATCTCCCTTTTCTGGTGCAGACCTTGGACATTGGCATTCGACCGTATGTTGCTGCGTTAGTGAACAATGTCTGGAGATTCACCAGTCCAGAAGAAGCCCTTGCGATATTTCTGGTGGAGTTAAGACTAATGACGGAAGCGCGTCTGAAACGACCGATAAGAAATGTAGTGCTTACGGTTCCTGTTTCGTTTAGTCGTTTCCAGCTGACCCGTCTAGAGCGTGCTTGTGCGATGGCTGGTCTTCACATTCTCAGGTTGATGCCTGAACCAACAGCAGTGGCAATGTTATATGGACAGCAACAACTGAAAGCTTCTCAGGAATCTATGGGTGGAAGTGAGAAAATTGCTCTCATTTTCAATATGGGTGCTGGTTACTGTGACGTTGCTGTGACTGCTACCGACGGAGGAGTATCCCAGATAAAAGCCTTGGCAGGAAGTACTATCGGCGGAGAAGACTTGCTTCAGAATATGATGCGTCATCTGTTACCAAATATATTCAAGACTCATGGGGTCAAAGAAATTGAATCAATGGCATTGCTTCGAGTTGCAACGCAGGATGCAATTCACCGGCTCTCGTCTGAAATCAGTGTTCAGGTCGATGTTGACTTGGGAGATGGTTTGAAGGTATACAAGGTTGTTGACAGGGCGGAGTTTGAGGAGGTGAACAAGGAGGTGTTTGAAAAGTGTGAACGCCTTATCATCCAATGTTTACATGATGCAAAGGTCAAAGCCGAGGATGTAAACGATGTGATAATTGTCGGTGGATGTTCTTATATCCCAAAGGTGAAGAATCTTGTTACTAACATATGCAAAGTATCAGAAGTTTATAAAGATATAAATCCTTTGGAAGGTGCCGTTTCCGGTGCAGCAATGGAAGGAGCTGTGGCGTCAGGTATCACTGATCCCTTTGGAAACTTGGACTTGTTAATGATTCAAGCCACGCCTCTAGCCATTGGAATTCGAGCTGATGGCAGCGGGTTTGTCCCTGTAATTCCAAAGAACACCAGATTGCCAGCGCGTAAGGATCTATGTTTCACAACTATTCACGACAATCAATCCGAGGCACTGATAGTTGTCTATGAAGGTGAGGGAAAGCAGGCAGAAGAAAATCACTTGTTGGGATATTTCAAGTTAATGGGAATACCTCCTGCACCAAAAGGAGTTCCTGAAATCAACGTGTGCATGGATGTTGATACTGCAAACGTGCTGACAGTTTTAGCTGGTGTTCTGATGCCTGGATCGCGTACCCCTGCAGTTCCTTTTATGCAAGTGAGGATGCCAATGATTGATGATGCGCAAGGTTGGTGTGCTGAGGCCCTAAATAGAACCTATGGTGCTACAATGGATTTGGTTACTCTCAAAAAGGCATGA 1527 0.4492 MKSYVSFKDESPSGGVTNHLSNEHEMLSGDTIFNIKRLIGRVDTDPVVRASKNLPFLVQTLDIGIRPYVAALVNNVWRFTSPEEALAIFLVELRLMTEARLKRPIRNVVLTVPVSFSRFQLTRLERACAMAGLHILRLMPEPTAVAMLYGQQQLKASQESMGGSEKIALIFNMGAGYCDVAVTATDGGVSQIKALAGSTIGGEDLLQNMMRHLLPNIFKTHGVKEIESMALLRVATQDAIHRLSSEISVQVDVDLGDGLKVYKVVDRAEFEEVNKEVFEKCERLIIQCLHDAKVKAEDVNDVIIVGGCSYIPKVKNLVTNICKVSEVYKDINPLEGAVSGAAMEGAVASGITDPFGNLDLLMIQATPLAIGIRADGSGFVPVIPKNTRLPARKDLCFTTIHDNQSEALIVVYEGEGKQAEENHLLGYFKLMGIPPAPKGVPEINVCMDVDTANVLTVLAGVLMPGSRTPAVPFMQVRMPMIDDAQGWCAEALNRTYGATMDLVTLKKA 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01479 508 FunFam heat shock 70 kDa protein-like 28 169 - -
Vifa1g01479 508 Pfam Hsp70 protein 3 459 IPR013126 GO:0005524|GO:0140662
Vifa1g01479 508 SUPERFAMILY Actin-like ATPase domain 165 347 IPR043129 -
Vifa1g01479 508 PRINTS 70kDa heat shock protein signature 440 456 - -
Vifa1g01479 508 PRINTS 70kDa heat shock protein signature 359 378 - -
Vifa1g01479 508 PRINTS 70kDa heat shock protein signature 331 351 - -
Vifa1g01479 508 PRINTS 70kDa heat shock protein signature 108 128 - -
Vifa1g01479 508 PRINTS 70kDa heat shock protein signature 299 315 - -
Vifa1g01479 508 Gene3D - 33 88 - -
Vifa1g01479 508 PANTHER HEAT SHOCK PROTEIN 70KDA 3 459 IPR013126 GO:0005524|GO:0140662
Vifa1g01479 508 FunFam Heat shock 70 kDa protein 8 202 280 - -
Vifa1g01479 508 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g01479 508 SUPERFAMILY Actin-like ATPase domain 22 151 IPR043129 -
Vifa1g01479 508 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 360 466 IPR029047 -
Vifa1g01479 508 Gene3D Actin; Chain A, domain 4 202 280 - -
Vifa1g01479 508 FunFam Heat shock 70 kDa protein 8 354 469 - -
Vifa1g01479 508 Gene3D - 154 328 - -
Vifa1g01479 508 CDD HSP70_NBD 31 346 - -
Vifa1g01479 508 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 356 470 IPR029047 -
Vifa1g01479 508 Gene3D - 2 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01479 Vifa-Chr1 242088605 242090131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01479 3 459 Calmodulin-binding Proteins AT3G12580 38.544 1.82e-94 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01479 K09489 - gmx:100809773 809.29