Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01477 ATGCCAGACACCGAACAGCCGCCGTCACCGGCGGAAGTCACCACCAAACTATTCGGAAAATACGAACTCGGCAAGCTCCTAGGCTGCGGCGCGTTCGCCAAAGTGTACCACGCGCGGAACATCGAAAACGGACAGAGCGTAGCCGTGAAAGTAATCAACAAGAAGAAAATCAACGCCATAGGACTCGCCGGAAACGTGAAACGCGAAATCTCAATCATGAGCCGTCTCCGTCATCCTAACATCGTTAGGCTTCACGAAGTTCTCGCCACCAAAACGAAAATCTACTTCGTCATGGAGTTCGCTAAAGGCGGCGAACTCTTCGCGAAAATCTCTACTAGAGGCCGTTTCAGCGAAGATCTATCGCGTCGCCTTTTTCAACAGCTCATCTCCGCCGTCGCTTACTGCCACGACCGTAACATCTTCCACCGTGACTTGAAACCTGAAAATCTTTTACTAGATGATAAGGGGAATTTGAAGGTTTCGGATTTTGGATTAAGTGCGGTGAAGGAGCAAATTCGTGTGGATGGGATGTTACACACGCTTTGCGGAACACCTGCTTACGTGGCGCCGGAGATTTTGGCGAAGAGAGGTTATGATGGTGCGAAGGTGGATATTTGGTCATGTGGTGTTATTCTGTTTGTTCTGGCTGCTGCTTATCTTCCGTTCAACGATCCGAATTTGATGGCGATGTATAGGAAGATATACACCGGGGAGTTTAAGTGTCCGCGGTGGTTTTCGGCGGATCTACGGCGGTTTTTATCGCGGTTGATGGATACGAATCCGGAGACGAGGATAACGATTGATGAGATTTTGAGAGATCCGTGGTTTAGGAAAGGGTATAAGGAGGTGAAGATTTATGACGAGGGGTTTGATTTTGGGGAGAAGGTTGGGGTTAGTGTTAATGGTGAGGAAGAGGATAATAAACCGGTGGATTTGAATGCGTTTGATATAATAGCGTTTTTTTCGTCTGGGTTGAATTTATCTAGATTGATTGGTGATGGTGTGGGTGTGGGTGGAGGGGAGATGTTTATGTTGAGGGAGTTACCGGGGAAGGTTGTTGAGAGGGCGGCAGCGGCGGCGAAGGCGGAGGGGTTAGTGGTGAGGAAGAAGAAGGAGTGTGGGGTGGAGATTGAGGGGCAAAATGGGGATTTGGTAATTGGGGTTGAGGTTTACCGGTTAACGGCTGAGCTGGTGGTGGTTGAGGTGAAGAGGTTTGGTGGGGACGCGGTTGCTTTTGAGAATGTGTGGAGGGAAAAGTTGAGGCCCCATTTGTGTGATGCAAATGCAACGACGTCGCATCAGGATCAAAGTCCGTCTCACGCGGTTTCTGCTGTCTCAGATAGTAATTGA 1350 0.4933 MPDTEQPPSPAEVTTKLFGKYELGKLLGCGAFAKVYHARNIENGQSVAVKVINKKKINAIGLAGNVKREISIMSRLRHPNIVRLHEVLATKTKIYFVMEFAKGGELFAKISTRGRFSEDLSRRLFQQLISAVAYCHDRNIFHRDLKPENLLLDDKGNLKVSDFGLSAVKEQIRVDGMLHTLCGTPAYVAPEILAKRGYDGAKVDIWSCGVILFVLAAAYLPFNDPNLMAMYRKIYTGEFKCPRWFSADLRRFLSRLMDTNPETRITIDEILRDPWFRKGYKEVKIYDEGFDFGEKVGVSVNGEEEDNKPVDLNAFDIIAFFSSGLNLSRLIGDGVGVGGGEMFMLRELPGKVVERAAAAAKAEGLVVRKKKECGVEIEGQNGDLVIGVEVYRLTAELVVVEVKRFGGDAVAFENVWREKLRPHLCDANATTSHQDQSPSHAVSAVSDSN 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01477 449 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01477 449 MobiDBLite consensus disorder prediction 429 449 - -
Vifa1g01477 449 FunFam Non-specific serine/threonine protein kinase 12 100 - -
Vifa1g01477 449 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Vifa1g01477 449 SUPERFAMILY Protein kinase-like (PK-like) 17 284 IPR011009 -
Vifa1g01477 449 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 408 - -
Vifa1g01477 449 Gene3D Transferase(Phosphotransferase) domain 1 11 308 - -
Vifa1g01477 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vifa1g01477 449 ProSiteProfiles NAF domain profile. 307 332 IPR018451 GO:0007165
Vifa1g01477 449 FunFam Non-specific serine/threonine protein kinase 11 309 - -
Vifa1g01477 449 Gene3D Kinase associated domain 1, KA1 309 427 - -
Vifa1g01477 449 Pfam NAF domain 309 369 IPR004041 GO:0007165
Vifa1g01477 449 CDD CIPK_C 313 425 - -
Vifa1g01477 449 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01477 449 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01477 Vifa-Chr1 241830571 241832012 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01477 1 432 CBL-interacting serine-threonine protein kinases AT2G30360 59.773 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa1g01477 Pkinase 6.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01477 - - gmx:100815088 591.652