Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01472 ATGGAGAATACATCGAAAGTGTTGATGCAAAGATACGAGTTAGGGAGATTACTAGGCCAAGGAACTTTCGGAAAAGTTTACTATGGAAGGAGTATAGTAACTAACCAAACCGTAGCTCTTAAAATGATTGACAAAGACAAGATTATAAAAAATGGCCAAGCTGATTGTATAAAGAGGGAAATATCGATTATGAGACTCGTGAAACATCCTAATATTGTACAGCTTTTTGAGGTCATGGCTACAAAGAGTAAGATATACTTTGTTTTGGAATATGCGAGAGGCGGTGAATTATTCAAGAAAGTGGCGAAAGGAAAGCTCAAAGAAGACATTGCACACAAGTATTTCAAGCAACTCGTTAGTGCGGTCGATTTTTGTCATAGTAGAGGTGTGTATCATCGAGACATAAAGCCGGAGAACATTTTATTAGATGAGAACGAGGACTTAAAGGTATCCGATTTTGGTTTAAGTGCTTTGGCGGAATCCAAAAGGCAAGATGGTTTGTTACATACAACTTGTGGAACGCCGGCTTATGTAGCTCCTGAAGTCATCAAAAGGAAGGGCTATGATGGTGCGAAAGCTGATATATGGTCTTGTGGAGTTGTTCTGTTTGTGTTACTTGCTGGTTATGTGCCTTTCAATGACTCGAATTTGATGGAAATGTATAGGAAGATAAGTAACGCGGAGTTTAAGTGTCCTAATTGGTTTGCGAAAAACGTTAGGAAGCTTTTGTGTAAGATGTTGGATCCGAATCCTAGCACTAGGATTTCTATTGATAAGATTAAAAAATGTTCTTGGTTTAAGTATGGACCGAATGGTAGACCGAAAAAGCTTGAAGAAGAAAACAAAAGTATCTCTTCTTTGGCTAGGAATTCTGCAGCATCGACTCTTCTGATTGAAGGCATATCAGCTGACACGACACTGATACAGACACGTGTGACAAATCATTCTGATGAAACGCGAGAGTCAGTTATACCGTTGAGTATAAATGCGTTTGATATCATCTCTCTTTCGAACGGTTTTAATCTAGGTGGATTCTTTGAAGATAGTTTTAAGAAACGGGAAGCGAGGTTTACTTCAAGACAACCCGCGTCGGTTATCATTTCAAGGCTGGAAGAGATTGCTAAGAGATTGAAGATGAAAATAAAGAAAAGGGCTGCTGGTTTGTTGAAATTAGAGGGAGTTGATGAAGGGAGGAAAGGGCTTTTGTCTATTGATGCTGAGATATTCGAGGTTACTCCGTTTTTCCATTTGATTGAAGTGAAAAAATCAAATGGAGATACATTGGAATATCAAAAAATATTGAATGAGAAAATTAGGCCTGCTCTTCAAGACATTGTTTGGGTTTGGCAAGGTGAAATACAAGAACAATCACAAGAGTTAGAGCCGTAG 1389 0.3852 MENTSKVLMQRYELGRLLGQGTFGKVYYGRSIVTNQTVALKMIDKDKIIKNGQADCIKREISIMRLVKHPNIVQLFEVMATKSKIYFVLEYARGGELFKKVAKGKLKEDIAHKYFKQLVSAVDFCHSRGVYHRDIKPENILLDENEDLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYVPFNDSNLMEMYRKISNAEFKCPNWFAKNVRKLLCKMLDPNPSTRISIDKIKKCSWFKYGPNGRPKKLEEENKSISSLARNSAASTLLIEGISADTTLIQTRVTNHSDETRESVIPLSINAFDIISLSNGFNLGGFFEDSFKKREARFTSRQPASVIISRLEEIAKRLKMKIKKRAAGLLKLEGVDEGRKGLLSIDAEIFEVTPFFHLIEVKKSNGDTLEYQKILNEKIRPALQDIVWVWQGEIQEQSQELEP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01472 462 FunFam Non-specific serine/threonine protein kinase 323 447 - -
Vifa1g01472 462 SUPERFAMILY Protein kinase-like (PK-like) 8 298 IPR011009 -
Vifa1g01472 462 ProSiteProfiles NAF domain profile. 323 347 IPR018451 GO:0007165
Vifa1g01472 462 Gene3D Kinase associated domain 1, KA1 327 448 - -
Vifa1g01472 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vifa1g01472 462 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01472 462 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vifa1g01472 462 CDD CIPK_C 329 443 - -
Vifa1g01472 462 FunFam Non-specific serine/threonine protein kinase 5 297 - -
Vifa1g01472 462 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 442 - -
Vifa1g01472 462 Pfam NAF domain 325 383 IPR004041 GO:0007165
Vifa1g01472 462 Gene3D Transferase(Phosphotransferase) domain 1 2 326 - -
Vifa1g01472 462 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01472 462 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Vifa1g01472 462 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01472 Vifa-Chr1 241200341 241201729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01472 1 455 CBL-interacting serine-threonine protein kinases AT5G58380 67.391 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa1g01472 Pkinase 4.2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01472 - K07198 gmx:100779316 721.465