Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01467 ATGTTTGGATGTCCAGAGACAGAAAGATTAGATGATATAGCAAAGATCAACTTATCAGAAGGAGAAACATCTTCTCAAATGGGAAGGAAGAATTTCTATGGTCCAACTTCAGGGACAACTTTAAACACGGTAACACCTTGTGCTGCATGTAAGCTTTTGAGAAGAAGGTGTGCTGAGGAATGTCCTTTCTCTCCTTATTTTTCTCCTCATGAGCCTCAAAAATTTGCAGCTGTTCACAAAGTGTTTGGTGCTAGCAATGTCTCAAAGTTGCTATTGGAAGTACCTGAAGGACAAAGAGCAGATGCAGCAAATAGTATGGTTTATGAAGCAAATTTGAGGTTAAGAGATCCTGTATATGGATGCATGGGTGCAATATCATCATTACAACAGCAAGTACAATCATTACAAGCAGAACTACATGCAGTTAGAACTGAGATACTAAAGTACAAATATAGAGAAGCTGCTAGTAATTTTATTTCCTCTCAAGTATCAATGCCTACAAATGCAAACTCACACCAAGATCTTTCTCAAACTCTTGTTCTTCCAACTTTAGCTCCTCCATCTCCTGCTCTTCCCCCACCACAAAAAGCATCGGCTTCTCAATCGATTATCCTTTCGTCATTTTCTTCGTCTTCGGCTTCTTCTGTTTACACTCCATCCAAAACAACAATGAGTCATGGATCTATCTCTAGTGAAAATATTCCTTACTTTGTTTAG 717 0.3863 MFGCPETERLDDIAKINLSEGETSSQMGRKNFYGPTSGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISSLQQQVQSLQAELHAVRTEILKYKYREAASNFISSQVSMPTNANSHQDLSQTLVLPTLAPPSPALPPPQKASASQSIILSSFSSSSASSVYTPSKTTMSHGSISSENIPYFV 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01467 238 MobiDBLite consensus disorder prediction 212 238 - -
Vifa1g01467 238 Coils Coil 125 145 - -
Vifa1g01467 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 42 193 - -
Vifa1g01467 238 Pfam Lateral organ boundaries (LOB) domain 46 143 IPR004883 -
Vifa1g01467 238 ProSiteProfiles LOB domain profile. 45 146 IPR004883 -
Vifa1g01467 238 MobiDBLite consensus disorder prediction 212 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01467 Vifa-Chr1 239922494 239923598 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01467 27 156 AS2 family AT2G30340 78.462 3.81e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g01467 LOB 2.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01467 - - gmx:100813489 307.375