Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01460 ATGAGGCTTAACATTAAGAATTTAAAATATTTTTCAATCCATTCCCGTTCCATTCTTCTCTCGCCCTCTCATGATTCCGAAGCAAGTTCGAGAAATCAAGCTTCGCGTAACAACGACTCCACTCGTTTATCGCTTACTCACTTCCTCGATCGCAAACTGCATAACTCTTCAACAGTCCCTCAAACCGTTCCGGGGAAATTGACGCCTTTTCAATCACCGGCCAGTGAGCAAGATGGAAGCGTCAAACTAACTGAAGAAGAGAGAAAGTCTGCAACTGCTGATGAGAAGTTGATTTTGGGAATGTTCAAGCAAGTGGGAAAATGTGACTTTGTTCCTCCGTTAGATCTTGATGAGTTAGGAAATTCTGTGGCAGGTGATGGTCAAGGAGCTAGGAAAAGGAAAAATCCATTTGAAGGGGAATTTCTCCGCCACCCACTTGTGAATTTGACAAGCATCTTGATTAACTGTTTTTGTCATCAATCTCATATGGGTTTTGCTTTTTCGTTATTGGGTACCATTCTTAAGAGTGGCTATGAACCTAACATGGTGACTTTTAATACAATTATTAATGGTTTTTGTATGAATGGGATGATTTTTAAAGCTTTGAACTTTTACCAAGACCTAGTAGCCCAAGGGTATCTTTTTGATGAGTTTACTTATGGGATTTTAATCAATGGGTTATGTAAAAATGGGCAAACTAGAGCTGCGTTGCATTTGATACAAGAGATGGAGGAACGGTCGGTTAAACCGAATCTAGTAATGTATAGTGCAGTCATTGATGGACTATGCAAAGATGGACTTGTCACGGATGCGTTTAGTTTGTGTTTTCGGATGGCTGATAAGGGAGTTTTACTTGATGTTGTCACGTACAACTCTTTAATTCGTGGTTGTTGCAGTCTGGATCCCTTTGCTAAGGCAAATGCTGAGGACTCTGGTGCCGGTGCCGGGACAAAAGAATATGTTCATGTCCGTGTACAACAGCGTAACGGAAGGAAAAGCTTAACAAATGTTCAAGGGTTAAAGAAAGAGTTCAGCTATAGCAAGATACTCAAGGACTTGAAGAAAGAATTTTGCTGTAATGGTACTGTTGTCGAGGACCTGAGTTGGGCCAGGTCATACAACTTCAGGGAGATCAAAGGAAGAATGTTTCTACTTTCCTTGTGCAGAAGGAGAATATCAAGCTTCATGGTTGAATTCGAAAGCTACAAATCCAAAAACATCAATTTCGATCGCTTTATTGAAGGTCATGCTAGGATCAAAAGGTCTGTTAATTTAGACAAAGGTGAAGAAGCAATAGAAAATAATAAGCCTGTCATATACGAAGACGTGTCTTTGGAAAGAGGTTCTTTCTTAGTGCAACAGGCCATGAGGGCATTCCGTGCTCAAAATTTAGAAAGTGCCAAATCAAGACTCAGCCTATGTGCAGAAGACGTTCGTAGTCAGATTGAAAAAGTTGGTAACACTTCAGAGTTATGTTCACAACTTGGAGCAGTCTTGGGTATGCTTGGTGACTGCTGGTATAGGAATTTATCTGTCAAGACGACAAACGTGCCAATAGCCCTGTTTAAGAGTCTTTGTGCTTATTGGAGTAAGGAAACTATACAAGCAATCAGTGAAAATAACACTAGAAATAGAGCTCAACTAAAGTGGATGCATCGAATGGGTCCCAAAAACTTCGCTTTGACTCGTGAAAAAGTGCGTGAAAAGGAAAAAAGAGAGCCCACTCAATCAGAAATGTTTGTTGAAACTCGAAAAGGAAATAAAGGAAAGGAACTGGATGTAGAAACTGGAAAAGTAATTGACGACATAAATGATAAAATTCAAGAGGATGACCTAAATGATAAAATTCAAGAGGACGACGTAGATGACGAATTTCAAGAGGACGACATAGATCTAGATGATGAATTTCAAGAGGATGATATAGATGGTGAATTTCAAGAGGACGACGTAGATGAAGAATTTATGGAGGATGACATATATAACGAATTTCAAGAGGACGATCTGGATGCTTTACTCCTAGAAGACAAACTTGAATGA 2037 0.3967 MRLNIKNLKYFSIHSRSILLSPSHDSEASSRNQASRNNDSTRLSLTHFLDRKLHNSSTVPQTVPGKLTPFQSPASEQDGSVKLTEEERKSATADEKLILGMFKQVGKCDFVPPLDLDELGNSVAGDGQGARKRKNPFEGEFLRHPLVNLTSILINCFCHQSHMGFAFSLLGTILKSGYEPNMVTFNTIINGFCMNGMIFKALNFYQDLVAQGYLFDEFTYGILINGLCKNGQTRAALHLIQEMEERSVKPNLVMYSAVIDGLCKDGLVTDAFSLCFRMADKGVLLDVVTYNSLIRGCCSLDPFAKANAEDSGAGAGTKEYVHVRVQQRNGRKSLTNVQGLKKEFSYSKILKDLKKEFCCNGTVVEDLSWARSYNFREIKGRMFLLSLCRRRISSFMVEFESYKSKNINFDRFIEGHARIKRSVNLDKGEEAIENNKPVIYEDVSLERGSFLVQQAMRAFRAQNLESAKSRLSLCAEDVRSQIEKVGNTSELCSQLGAVLGMLGDCWYRNLSVKTTNVPIALFKSLCAYWSKETIQAISENNTRNRAQLKWMHRMGPKNFALTREKVREKEKREPTQSEMFVETRKGNKGKELDVETGKVIDDINDKIQEDDLNDKIQEDDVDDEFQEDDIDLDDEFQEDDIDGEFQEDDVDEEFMEDDIYNEFQEDDLDALLLEDKLE 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01460 678 MobiDBLite consensus disorder prediction 54 88 - -
Vifa1g01460 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Vifa1g01460 678 Pfam Translation initiation factor SUI1 318 366 IPR001950 GO:0003743|GO:0006413
Vifa1g01460 678 Pfam Plant transposase (Ptta/En/Spm family) 521 611 IPR004252 -
Vifa1g01460 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Vifa1g01460 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Vifa1g01460 678 Gene3D - 309 409 - -
Vifa1g01460 678 SUPERFAMILY eIF1-like 300 366 IPR036877 GO:0003743|GO:0006413
Vifa1g01460 678 CDD eIF1_SUI1 319 366 IPR005874 GO:0003743
Vifa1g01460 678 MobiDBLite consensus disorder prediction 22 41 - -
Vifa1g01460 678 ProSiteProfiles Translation initiation factor SUI1 family profile. 321 400 IPR001950 GO:0003743|GO:0006413
Vifa1g01460 678 MobiDBLite consensus disorder prediction 566 585 - -
Vifa1g01460 678 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 127 301 - -
Vifa1g01460 678 Gene3D Tetratricopeptide repeat domain 210 308 IPR011990 GO:0005515
Vifa1g01460 678 Gene3D Tetratricopeptide repeat domain 130 209 IPR011990 GO:0005515
Vifa1g01460 678 Pfam PPR repeat family 250 299 IPR002885 -
Vifa1g01460 678 Pfam PPR repeat family 180 229 IPR002885 -
Vifa1g01460 678 MobiDBLite consensus disorder prediction 54 79 - -
Vifa1g01460 678 NCBIfam pentatricopeptide repeat 183 216 IPR002885 -
Vifa1g01460 678 NCBIfam pentatricopeptide repeat 218 251 IPR002885 -
Vifa1g01460 678 NCBIfam pentatricopeptide repeat 253 286 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01460 Vifa-Chr1 238772875 238778099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01460 299 412 Eukaryotic Initiation Factors Gene Family AT1G54290 60.526 7.57e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01460 - - psat:127105702 286.574