Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01459 ATGGAGAATGACACAATTAGAAACATTCCAACTTCCTCTCCATCTAAATTTTCTCACTCTTTGAGTTCTTCACTTCCACCTCTTGCTTCTCAAGTTGTGATGAGTCCTTGTGCTGCTTGCAAGATTTTGAGAAGAAGATGTGCTGACAAATGTGTTTTGGCACCTTATTTTCCTCCCACTGATCCTGCCAAATTTACCACTGCTCATCGTGTCTTTGGTGCCAGCAATATCATCAAGTTCTTACAGGAACTTCCGGAGTCTCAACGAGCCGATGCAGTGAGCAGCATGGTTTACGAGGCTAGTGCAAGAATTAGAGATCCTGTTTATGGATGTGCAGGTGCAATTTGTCACCTCCAAAATCAAGTTAATGAGCTTCAAGCACAATTAGCCAAGTCACAAGTTGAACTTATGAACATGCAATTGCAACAATCCAATCTATTGGCCATGATTTGCATGGAAATGAAAGAAACCCCACAAGAATCTCCACAACAATCAATGGACAATTTCATTTCAAGTCCTACTTATAGTAGTGATTACCAAAACAATCTCAACTTCTTTGAGGACAACACTAGCCCAAATTCATTGTGGGAGCCTCTTTGGACATGA 606 0.4092 MENDTIRNIPTSSPSKFSHSLSSSLPPLASQVVMSPCAACKILRRRCADKCVLAPYFPPTDPAKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQNQVNELQAQLAKSQVELMNMQLQQSNLLAMICMEMKETPQESPQQSMDNFISSPTYSSDYQNNLNFFEDNTSPNSLWEPLWT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01459 201 Coils Coil 122 142 - -
Vifa1g01459 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 166 - -
Vifa1g01459 201 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Vifa1g01459 201 Pfam Lateral organ boundaries (LOB) domain 36 132 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01459 Vifa-Chr1 238764188 238766321 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01459 32 201 AS2 family AT2G28500 69.730 1.81e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g01459 LOB 2.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01459 - - gmx:100819336 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01459 1 238764188 238766321 Vifa1g01459 1 238764188 238766321 ECH