Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01456 ATGGTCACTTTGGCAACAGTTTTGAGCCCTACCGTTGCAAAGCTGACTCCTAATTATTATGACAGAATTTGTCCTAAGGCATTGCCAATCATAAAGTTAGCTGTTAAGCAAGCAATTTATCGTGAGCCACGCATTGGAGCTTCATTATTGCGTTTGCATTTCCACGATTGCTTTGTTAACGGTTGTGATGGATCAGTTCTTCTAGATGACACTCCTACCTTCCGTGGTGAGAAGACTGCATTTCCAAATATCAATTCAATTAGAGGTTTTGAACTTGTTGATCAAATTAAAGCTGCAGTTACCAAAGCTTGCACACGTGATGTTGTATCATGCGCAGATATTTTAGCCATAGCGGCTCGAGATTCTGTAACCATATTGGGTGGTAACCAATATTGGTACCAAGTGTTGCTAGGAAGAAGAGATGCAAGAACTGCAAGCTGGGATGCTGCAAATGCAAATCTTCCACCTCCATTTTTCAATTTCTCACAACTCATCACAAATTTCAATTCTCATGGCCTAAACCTTAAAGACTTAGTTGTTCTATCTGGTGGCCACACAATTGGACTTGCCAGATGCACTACTTTTAGAGACAGAATCTTCAATGACACCAACATAGACGCCACTTTTGCAGCCAATTTACAGAAAACATGTCCTCGAATAGGAGGCGACAACAGCTTAGCACCATTTGATTCTACTCCAAAAAAAGTTGACACAGCATACTATAAGGCTTTGTTGTACAAAAAGGGTCTCCTTCATTCTGATCAAGAGCTTTTCAAAGGTGATGGTTCTCAAAGTGATAAATTAGTGCTGAAATATAGCGAAGACTCTTATGCTTTTGCTAAAGATTTTGGAGTTTCTATGATCAAGATGGGTAACTTGAAGCCTCTTACTGGGAAAAAGGGTGAGATAAGGTGCAATTGCAGAAAAGTCAACAACTCCTGA 942 0.4002 MVTLATVLSPTVAKLTPNYYDRICPKALPIIKLAVKQAIYREPRIGASLLRLHFHDCFVNGCDGSVLLDDTPTFRGEKTAFPNINSIRGFELVDQIKAAVTKACTRDVVSCADILAIAARDSVTILGGNQYWYQVLLGRRDARTASWDAANANLPPPFFNFSQLITNFNSHGLNLKDLVVLSGGHTIGLARCTTFRDRIFNDTNIDATFAANLQKTCPRIGGDNSLAPFDSTPKKVDTAYYKALLYKKGLLHSDQELFKGDGSQSDKLVLKYSEDSYAFAKDFGVSMIKMGNLKPLTGKKGEIRCNCRKVNNS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01456 313 ProSiteProfiles Plant heme peroxidase family profile. 14 311 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 FunFam Peroxidase 155 290 - -
Vifa1g01456 313 SUPERFAMILY Heme-dependent peroxidases 15 311 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 ProSitePatterns Peroxidases proximal heme-ligand signature. 177 187 IPR019793 -
Vifa1g01456 313 PRINTS Haem peroxidase superfamily signature 109 126 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 PRINTS Haem peroxidase superfamily signature 229 244 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 PRINTS Haem peroxidase superfamily signature 129 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 PRINTS Haem peroxidase superfamily signature 46 60 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 PRINTS Plant peroxidase signature 227 242 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 PRINTS Plant peroxidase signature 24 43 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 PRINTS Plant peroxidase signature 176 188 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 PRINTS Plant peroxidase signature 243 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 PRINTS Plant peroxidase signature 88 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 PRINTS Plant peroxidase signature 108 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 PRINTS Plant peroxidase signature 285 298 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 PRINTS Plant peroxidase signature 48 68 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 Gene3D - 18 308 - -
Vifa1g01456 313 PANTHER PEROXIDASE 72-RELATED 13 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01456 313 CDD secretory_peroxidase 14 310 IPR033905 GO:0004601|GO:0042744
Vifa1g01456 313 FunFam Peroxidase 18 159 - -
Vifa1g01456 313 ProSitePatterns Peroxidases active site signature. 46 57 IPR019794 GO:0004601
Vifa1g01456 313 Gene3D Peroxidase, domain 2 155 290 - -
Vifa1g01456 313 Pfam Peroxidase 34 274 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01456 Vifa-Chr1 238569679 238570806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01456 13 311 Peroxidase AT5G05340 55.960 4.34e-116 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01456 K00430 - gmx:100810852 480.715