Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01452 ATGGATTCTCGTATCCAATTTTATCTTGTGACTTTCATGGTCACTTTGGCAACAGTTTTGAGTCCTACCGTTGCAAAGCTGACTCCTAATTATTATGACAGAATTTGTCCTAAGGCATTGCCAATCATAAAGTTAGCTGTTAAGCAAGCAATTTATCGTGAGCCACGCATTGGAGCTTCATTATTGCGTTTGCATTTCCACGATTGCTTTGTTAACGGTTGTGATGGATCAGTTCTTCTAGATGACACTCCTACCTTCCGTGCTGCAGTTACCAAAGCTTGCAGACGTGATGTTGTATCATGCGCAGATATTTTAGCCATAGCGGCTCGAGATTCTGTAGCCATATTGGGTGGTAACCAATATTGGTACCAAGTGTTGCTAGGAAGAAGAGATGCAAGAACTGCAAGCTGGGATGCTGCAAATGCAAATCTTCCACCTCCATTTTTCAATTTCTCACAACTCATCACAAATTTCAATTCTCATGGCCTAAACCTTAAAGACTTAGTTGTTCTATCTGGTGGCCACACAATTGGACTTGCCAGATGCACTACTTTTAGAGACAGGATCTTCAATGACACCAACATAGACGCCACTTTTGCAGCCAATTTACAGAAAACATGTCCTCGAATAGGAGGCGACAACAGCTTAGCACCATTTGATTCTACTCCAAAAAAAGTTGACACAGCATACTATAAGGCTTTGTTGTACAAAAAGGGTCTCCTTCATTCTGATCAAGAGCTTTTCAAAGGTGATGGTTCTCAAAGTGATAGATTGGTGCTGAAATATAGCAAAGACTCTTATGCTTTTGCTAAAGATTTTGGAGTTTCTATGATCAAGATGGGTAACTTGAAGCCTCTTACTGGGAAAAAGGGTGAGATAAGGTGCAATTGCAGAAAAGTCAACAACTCCTGA 912 0.4068 MDSRIQFYLVTFMVTLATVLSPTVAKLTPNYYDRICPKALPIIKLAVKQAIYREPRIGASLLRLHFHDCFVNGCDGSVLLDDTPTFRAAVTKACRRDVVSCADILAIAARDSVAILGGNQYWYQVLLGRRDARTASWDAANANLPPPFFNFSQLITNFNSHGLNLKDLVVLSGGHTIGLARCTTFRDRIFNDTNIDATFAANLQKTCPRIGGDNSLAPFDSTPKKVDTAYYKALLYKKGLLHSDQELFKGDGSQSDRLVLKYSKDSYAFAKDFGVSMIKMGNLKPLTGKKGEIRCNCRKVNNS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01452 303 PRINTS Plant peroxidase signature 233 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 PRINTS Plant peroxidase signature 275 288 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 PRINTS Plant peroxidase signature 217 232 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 PRINTS Plant peroxidase signature 166 178 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 SUPERFAMILY Heme-dependent peroxidases 27 301 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 Gene3D - 27 86 - -
Vifa1g01452 303 Gene3D - 87 301 - -
Vifa1g01452 303 Pfam Peroxidase 46 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 Gene3D Peroxidase, domain 2 145 280 - -
Vifa1g01452 303 CDD secretory_peroxidase 26 300 IPR033905 GO:0004601|GO:0042744
Vifa1g01452 303 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vifa1g01452 303 PRINTS Haem peroxidase superfamily signature 219 234 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 PRINTS Haem peroxidase superfamily signature 99 116 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 PRINTS Haem peroxidase superfamily signature 167 182 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 PRINTS Haem peroxidase superfamily signature 119 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 ProSiteProfiles Plant heme peroxidase family profile. 26 301 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g01452 303 ProSitePatterns Peroxidases proximal heme-ligand signature. 167 177 IPR019793 -
Vifa1g01452 303 FunFam Peroxidase 145 280 - -
Vifa1g01452 303 PANTHER PEROXIDASE 72-RELATED 25 87 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01452 Vifa-Chr1 238372040 238373203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01452 25 301 Peroxidase AT5G05340 51.656 1.41e-100 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01452 K00430 - gmx:100810852 439.113