LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g01452	ATGGATTCTCGTATCCAATTTTATCTTGTGACTTTCATGGTCACTTTGGCAACAGTTTTGAGTCCTACCGTTGCAAAGCTGACTCCTAATTATTATGACAGAATTTGTCCTAAGGCATTGCCAATCATAAAGTTAGCTGTTAAGCAAGCAATTTATCGTGAGCCACGCATTGGAGCTTCATTATTGCGTTTGCATTTCCACGATTGCTTTGTTAACGGTTGTGATGGATCAGTTCTTCTAGATGACACTCCTACCTTCCGTGCTGCAGTTACCAAAGCTTGCAGACGTGATGTTGTATCATGCGCAGATATTTTAGCCATAGCGGCTCGAGATTCTGTAGCCATATTGGGTGGTAACCAATATTGGTACCAAGTGTTGCTAGGAAGAAGAGATGCAAGAACTGCAAGCTGGGATGCTGCAAATGCAAATCTTCCACCTCCATTTTTCAATTTCTCACAACTCATCACAAATTTCAATTCTCATGGCCTAAACCTTAAAGACTTAGTTGTTCTATCTGGTGGCCACACAATTGGACTTGCCAGATGCACTACTTTTAGAGACAGGATCTTCAATGACACCAACATAGACGCCACTTTTGCAGCCAATTTACAGAAAACATGTCCTCGAATAGGAGGCGACAACAGCTTAGCACCATTTGATTCTACTCCAAAAAAAGTTGACACAGCATACTATAAGGCTTTGTTGTACAAAAAGGGTCTCCTTCATTCTGATCAAGAGCTTTTCAAAGGTGATGGTTCTCAAAGTGATAGATTGGTGCTGAAATATAGCAAAGACTCTTATGCTTTTGCTAAAGATTTTGGAGTTTCTATGATCAAGATGGGTAACTTGAAGCCTCTTACTGGGAAAAAGGGTGAGATAAGGTGCAATTGCAGAAAAGTCAACAACTCCTGA	912	0.4068	MDSRIQFYLVTFMVTLATVLSPTVAKLTPNYYDRICPKALPIIKLAVKQAIYREPRIGASLLRLHFHDCFVNGCDGSVLLDDTPTFRAAVTKACRRDVVSCADILAIAARDSVAILGGNQYWYQVLLGRRDARTASWDAANANLPPPFFNFSQLITNFNSHGLNLKDLVVLSGGHTIGLARCTTFRDRIFNDTNIDATFAANLQKTCPRIGGDNSLAPFDSTPKKVDTAYYKALLYKKGLLHSDQELFKGDGSQSDRLVLKYSKDSYAFAKDFGVSMIKMGNLKPLTGKKGEIRCNCRKVNNS	303

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g01452	303	PRINTS	Plant peroxidase signature	233	250	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa1g01452	303	PRINTS	Plant peroxidase signature	275	288	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa1g01452	303	PRINTS	Plant peroxidase signature	60	80	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa1g01452	303	PRINTS	Plant peroxidase signature	217	232	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa1g01452	303	PRINTS	Plant peroxidase signature	166	178	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa1g01452	303	PRINTS	Plant peroxidase signature	36	55	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa1g01452	303	SUPERFAMILY	Heme-dependent peroxidases	27	301	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Vifa1g01452	303	Gene3D	-	27	86	-	-
	Vifa1g01452	303	Gene3D	-	87	301	-	-
	Vifa1g01452	303	Pfam	Peroxidase	46	264	IPR002016	GO:0004601\|GO:0006979\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g01452	Vifa-Chr1	238372040	238373203	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g01452	25	301	Peroxidase	AT5G05340	51.656	1.41e-100	296

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g01452	K00430		-	gmx:100810852	439.113

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