Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01434 ATGCATGCAGATACAGAGACAGATGAAGTGTATGCACAGATGACCTTGCAACCTCTAAATCCTGATGAGCAAAAAGAGGCATATCATCCTGCAGAGTTGGGAACTGCAAATAAACAGCCAACAAACTATTTCTGCAAAATTTTGACTGCCAGTGATACAAGCACTCATGGGGGTTTCTCTGTTCCTCGCCGCGCAGCTGAAAAAGTTTTCCCTCCATTGGACTTTTCCCAACAGCCTCCTGCTCAAGAGTTAATTGCCAGGGATTTGCATGGTAATGACTGGAAATTCAAACATATCTTCCGCGGCCAGCCCAAAAGGCATTTGCTTACAACTGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGAAAAAAACCAGTTGCTTCTAGGCATTCGGTGTGCCAATCGCCCACAACATATGATGCCTTCATCAGTGTTGTCAAGTGACAGCATGCACTTGGGGCTGCTTGCTGCTGCAGCTCACGCCGCTGCAACGAACAGTCGTTTCACCATTTTCTATAACCCACGGTATAATTCATATCATATATTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAACACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTCAAGAGGATCCAGTTCTTAGACCAAGCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTCTAATTTAA 1071 0.4164 MHADTETDEVYAQMTLQPLNPDEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRCANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRYNSYHIFLDDYFNARISDFGLAKLMNMNQSKTNTGIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILTDWAYDCYKDGAVDALVEGDNEALDDKEKLEKLVMIAIWCVQEDPVLRPSMRNVIHMLEGTVEVQVPPYPSQISIQYSLI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01434 356 SUPERFAMILY Protein kinase-like (PK-like) 192 347 IPR011009 -
Vifa1g01434 356 SMART B3_2 44 146 IPR003340 GO:0003677
Vifa1g01434 356 FunFam Auxin response factor 42 146 - -
Vifa1g01434 356 CDD B3_DNA 43 136 IPR003340 GO:0003677
Vifa1g01434 356 SUPERFAMILY DNA-binding pseudobarrel domain 29 173 IPR015300 -
Vifa1g01434 356 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 201 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa1g01434 356 Gene3D Transferase(Phosphotransferase) domain 1 189 342 - -
Vifa1g01434 356 ProSiteProfiles B3 DNA-binding domain profile. 44 146 IPR003340 GO:0003677
Vifa1g01434 356 Pfam B3 DNA binding domain 44 143 IPR003340 GO:0003677
Vifa1g01434 356 ProSiteProfiles Protein kinase domain profile. 33 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01434 356 Gene3D - 42 144 IPR015300 -
Vifa1g01434 356 Pfam Protein kinase domain 193 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01434 Vifa-Chr1 234648476 234650247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01434 1 187 B3 DNA Binding Superfamily AT1G30330 89.305 4.27e-109 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa1g01434 Pkinase 3.4e-15 CL0016
TF B3 Vifa1g01434 Pkinase 3.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01434 - - psat:127108416 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01434 1 234648476 234650247 Vifa1g01434 1 234648476 234650247 ECH
Vifa1g01434 1 234648476 234650247 Vifa6g00634 6 241721297 241725567 PCT