Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01433 ATGCATGCAGATACAGAGACAGATGAAGTGTATGCACAGATGACCTTGCAACCTCTAAATCCTGATGAGCAAAAAGAGGCATATCATCCTGCAGAGTTGGGAACTGCAAATAAACAGCCAACAAACTATTTCTGCAAAATTTTGACTGCCAGTGATACAAGCACTCATGGGGGTTTCTCTGTTCCTCGCCGCGCAGCTGAAAAAGTTTTCCCTCCATTGGACTTTTCCCAACAGCCTCCTGCTCAAGAGTTAATTGCCAGGGATTTGCATGGTAATGACTGGAAATTCAAACATATCTTCCGCGGCCAGCCCAAAAGGCATTTGCTTACAACTGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGAAAAAAACCAGTTGCTTCTAGGCATTCGGTGTGCCAATCGCCCACAACATATGATGCCTTCATCAGTGTTGTCAAGTGACAGCATGCACTTGGGGCTGCTTGCTGCTGCAGCTCACGCCGCTGCAACGAACAGTCGTTTCACCATTTTCTATAACCCACGGTATAATTCATATCATATATTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAACACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTCAAGAGGATCCAGTTCTTAGACCAAGCATGAGAAATGTGATACATATGCTTGAAGGTTATAGTTACTTAGGCGTTAAGGTTAGATGGAAAAACTTCTTTTACTACATTTTCAACGTGTATTTCCCTTGTGTGTTTTCCTTGAAACGTGCTTTGTGGAATAATTTGTTGGAGCTTAAAGCGAGACATACTAACAGAGAGTGGTGTTTTGGTGGGGATTTTAATGATGTTAAGAGTCTTAGGGAGAGAAAAGGAAGGTTGCAACATTGTAATAATTTAGAGATGAAGGAGTTTGGTGAGTTCATTGAGGATAGTTCCTTTGTTGATATTCATTGCAAAGGTAAAAAGTTCAGTTGGTTTAGCAGCGACGGGAAGGCGATGAGTAGGATTGGTTGTTTCTTGGTTTCAGACGAAATTATTAGTATATTGGGGGTGGTCGGTCAACTTATTGGGTTGAGAGATATTTCATATCATTGTCCGATATGGTTGGTGGTGGATAAATCGGATTGGGGACCTAAACCATTCAAATTTAACAATTAG 1488 0.4066 MHADTETDEVYAQMTLQPLNPDEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRCANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRYNSYHIFLDDYFNARISDFGLAKLMNMNQSKTNTGIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILTDWAYDCYKDGAVDALVEGDNEALDDKEKLEKLVMIAIWCVQEDPVLRPSMRNVIHMLEGYSYLGVKVRWKNFFYYIFNVYFPCVFSLKRALWNNLLELKARHTNREWCFGGDFNDVKSLRERKGRLQHCNNLEMKEFGEFIEDSSFVDIHCKGKKFSWFSSDGKAMSRIGCFLVSDEIISILGVVGQLIGLRDISYHCPIWLVVDKSDWGPKPFKFNN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01433 495 Gene3D Endonuclease/exonuclease/phosphatase 333 481 IPR036691 -
Vifa1g01433 495 ProSiteProfiles Protein kinase domain profile. 33 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01433 495 SMART B3_2 44 146 IPR003340 GO:0003677
Vifa1g01433 495 Pfam B3 DNA binding domain 44 143 IPR003340 GO:0003677
Vifa1g01433 495 Pfam Protein kinase domain 193 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01433 495 CDD B3_DNA 43 136 IPR003340 GO:0003677
Vifa1g01433 495 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 201 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa1g01433 495 Gene3D Transferase(Phosphotransferase) domain 1 187 332 - -
Vifa1g01433 495 SUPERFAMILY DNase I-like 322 481 IPR036691 -
Vifa1g01433 495 ProSiteProfiles B3 DNA-binding domain profile. 44 146 IPR003340 GO:0003677
Vifa1g01433 495 SUPERFAMILY Protein kinase-like (PK-like) 193 365 IPR011009 -
Vifa1g01433 495 FunFam Auxin response factor 42 146 - -
Vifa1g01433 495 SUPERFAMILY DNA-binding pseudobarrel domain 29 173 IPR015300 -
Vifa1g01433 495 Gene3D - 42 144 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01433 Vifa-Chr1 234646630 234650247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01433 1 187 B3 DNA Binding Superfamily AT1G30330 89.305 1.30e-106 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa1g01433 Pkinase 6.7e-15 CL0016
TF B3 Vifa1g01433 Pkinase 6.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01433 - - psat:127108416 369.777