Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01428 ATGGAATTCCAAAATGGAGAAGATGTTGCTTCCAATTTGCTCAAAGCTCAAAGCCACATATGGAATCACATTTTCAACTTCATCAATTCCATGTCACTTAAATGTGTTGTTGATTTAGGCATACCTGATATCTTACATAACTATGGCAAACCCATGTCACTCTCAAAACTCATTTCTTCACTACCACTTCATCCTTCAAAAATCCCTTACATGTATCGTTTGATGCGTATCATGACTTATTCTGGTTTTTTCTCGCAACAAAATGTTACGGATAATGAGCTAGAAATCGAGTTTATGTTAACCGATGTATCTAGATTATTACTTAAGGACACTCCAATGAGTGTGGCACCGTTTGTGCAGGCGGTGCTTGATCCAGTATTGACAAGTCCGTGGCATCAAATGTCCACTTGGTTAAAAAACGAGGATCCTACGGCATTTGAAACAACACATGGGAGGGTTTTGTGGGATTATGCTGCACATAACCCCATATTTAACAATTTGTTTAATGATTCCATGGCAAGTGATTCTCAATTAGTGACTAATTTGTTGCTGGAGAAGGGTAGGGAAGTGTTCGATAAATTGGAGTCATTGGTTGATGTTGGAGGAGGCACAGGGACCACGGCAAAGGCTATTGCCAAGTTATTTCCAGAATTGGAGTGCATTGTGTTTGATCTTCCACATGTTGTTGATGGCTTAGAAGGAATTCATAACCTAAACTATGTTGGTGGAGATATGTTTCAAGAAATTCCTCAGGCACATGCCATTTTGTTGAAGTGGATATTGCATGATTGGAATGACGAAGAATGTGTAAAGATATTGAAGAAATGCAAGGAATCGTTAGAGAAGAAAGGTAAAGAAGGGAAAGTGATTATCATAGAGATGGTGTTAGACAATGAGAAAGAAAATATTAATGAATCAGTTGAAACACAACTCTTGTTTGATATGTTGATGATGGTATTAGTCACCGGAAAAGAGAGAAACAAGAGAGAATGGATTAAGTTGATTTCTTCAGCTGGTTTTAGTGACTATAAGATAACTCCAATTTTAGGCTTAAGGTCTATTATTGAGATCTATCCATAA 1080 0.3741 MEFQNGEDVASNLLKAQSHIWNHIFNFINSMSLKCVVDLGIPDILHNYGKPMSLSKLISSLPLHPSKIPYMYRLMRIMTYSGFFSQQNVTDNELEIEFMLTDVSRLLLKDTPMSVAPFVQAVLDPVLTSPWHQMSTWLKNEDPTAFETTHGRVLWDYAAHNPIFNNLFNDSMASDSQLVTNLLLEKGREVFDKLESLVDVGGGTGTTAKAIAKLFPELECIVFDLPHVVDGLEGIHNLNYVGGDMFQEIPQAHAILLKWILHDWNDEECVKILKKCKESLEKKGKEGKVIIIEMVLDNEKENINESVETQLLFDMLMMVLVTGKERNKREWIKLISSAGFSDYKITPILGLRSIIEIYP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01428 359 SUPERFAMILY "Winged helix" DNA-binding domain 11 111 IPR036390 -
Vifa1g01428 359 Pfam O-methyltransferase domain 131 341 IPR001077 GO:0008171
Vifa1g01428 359 Gene3D Vaccinia Virus protein VP39 108 359 IPR029063 -
Vifa1g01428 359 Pfam Dimerisation domain 31 78 IPR012967 GO:0046983
Vifa1g01428 359 FunFam Coniferyl alcohol 9-O-methyltransferase 4 107 - -
Vifa1g01428 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 357 IPR029063 -
Vifa1g01428 359 FunFam O-methyltransferase ZRP4 109 359 - -
Vifa1g01428 359 PIRSF O-mtase 1 359 IPR016461 GO:0008168
Vifa1g01428 359 Gene3D - 3 107 IPR036388 -
Vifa1g01428 359 PANTHER O-METHYLTRANSFERASE 14 344 IPR016461 GO:0008168
Vifa1g01428 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 359 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01428 Vifa-Chr1 233625500 233627039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01428 45 359 Monolignol Biosynthesis Gene Families AT1G51990 34.579 1.98e-53 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01428 - K16040 gmx:100781008 498.434