Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01426 ATGACCGTCATCGACATTCTCTTCCGTGTCGACGCCGTCTGCAAAAAATACGAAAAATACGACATTGACAAACAGCGTGAACTCAACGCTTACGGTGATGACGCCTTCGCCCGTCTCTATGCCGCCGTCGATTCCACCATTCAACAAGCCCTCAATAAATCTGAGGCTGCGTCTAAGGAGACTAACAGGGCTGCTGCTGCGGCTATGAATGCTGAGGTTCGTAGAGCCAAGGGGAGATTGATGGATGAAGTTCCTAAACTCCACAAACTCGTTAATAAGAAGGTTAAAGGTCTCACAAAGGAAGACATAGCCGTTCGTCAAGATCTTGTTGGCGTATTGCCAGAAAGAATCCAAGCAATACCGGATGGTATTACATCTGCTGCTAATCAGACCGGAGGATGGGCGGCTACTTCATCCCATCCGCATATCAAGTTTGATACACCAGAGGGACATATTGGCAGTGATTATTTCAATCCAAGTGAAGAATCCAGTCAGTTTCGATCAGAATATGAACTGCGCAAGATGAAACAGGATGAAGGACTTGATATCATATCAGAAGGATTGGATACTTTGAAAAATCTAGCACATGATATGAATGAGGAAATAGACCGACAAGTTCCTTTAATGGATGAAATTGACACAAAGGTGGATAAAGCAACAAGTGATGTGAGAAACACTAACTTACGGCTGAAGAAAACTCTCACCGAGCTGAGGTCCAGTCGAAATTTCTGCATCGACATCACTCTAATGTGCGTTCTTCTTGGAATCGTTATGTATTTATACAATGCACTGAGGTGA 798 0.4398 MTVIDILFRVDAVCKKYEKYDIDKQRELNAYGDDAFARLYAAVDSTIQQALNKSEAASKETNRAAAAAMNAEVRRAKGRLMDEVPKLHKLVNKKVKGLTKEDIAVRQDLVGVLPERIQAIPDGITSAANQTGGWAATSSHPHIKFDTPEGHIGSDYFNPSEESSQFRSEYELRKMKQDEGLDIISEGLDTLKNLAHDMNEEIDRQVPLMDEIDTKVDKATSDVRNTNLRLKKTLTELRSSRNFCIDITLMCVLLGIVMYLYNALR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01426 265 Pfam SNARE domain 208 257 IPR000727 -
Vifa1g01426 265 CDD SNARE_Qc 176 232 - -
Vifa1g01426 265 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa1g01426 265 FunFam Putative syntaxin-71-like 171 232 - -
Vifa1g01426 265 PANTHER SYNTAXIN 53 256 IPR045242 -
Vifa1g01426 265 SUPERFAMILY SNARE fusion complex 164 232 - -
Vifa1g01426 265 SMART tSNARE_6 166 233 IPR000727 -
Vifa1g01426 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Vifa1g01426 265 Gene3D - 172 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01426 Vifa-Chr1 233043152 233044860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01426 1 265 SNARE and Associated Proteins AT3G09740 65.169 1.52e-130 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01426 K08506 - gmx:100817729 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01426 1 233043152 233044860 Vifa1g01426 1 233043152 233044860 ECH