Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01425 ATGGACGGAGAACAAAAGGGATCCAAATCGGATTACAATTTTCCGCCCGGTTTTAGATTCCATCCTTCTGATGAGGAACTCATAGTTCATTACCTGCAAAACAAAATCAAATCGCGTCCGCTTCCAGCATCTATTATAGCCGAGATTGATCTCTACAAATATAATCCATGGGAGTTACCAAATAAGTCTTTGTTTGGAGAGGAAGAATGGTTTTTCTTTAGTCCGAGAGACCGAAAGTATCCGAATGGATTAAGGCCAAATAGAACAGCAGCTTCAGGTTACTGGAAGGCAACTGGAACTGATAAGCCGATTATTTCTTCGTGCGGATCAAAGCACATAGGAGTCAAGAAAGCTCTTGTGTTTTATTCAGGTAGACCTCCTAAGGGTGGTAAGACAGATTGGATCATGAATGAATATAGGTTGGTTGACACAACCATGAGATCGTTCAGACTAAAAGGTTCCATGCGGTTGGATGACTGGGTATTATGTCGGGTTCGACATAGAGGCTACTCGTTGAAGAATTTATCTGATAATCAAGAGAATCATTGTGAACCAAGCAAACCAGTAAACCTACAGAAGGGTGAAGAACAACAAACGAATACGAGTTTTCGAGCTGACATGATTACAGATTATCAATACAAAGATTATCAGATCATAGCCTCTATTCTTGTTGGAGGAGTTATACCTCCAACTGAGAACATGTCAAGTTTGAGCTTTAAGGAAATGCGAAGCAACAATTTAACTTCGGTTTATGAAGAAAGTTTCGATAAAATGAATTCTCAAACCACAATCCCTTCTTTGGAATGTTACTTCAACCCGCTGAAAAGAAAATTTAATGAGGATGATGAACAGTTGGAAAATCTCATTTCTTTTAATAGCAAATTCAACATTGAGAACAAAATAGAGAAATCTCCAAGCATCGATTTTCAAGAACTAAACAAATTAACCTTTGCAGAAAGATATCAGCAGTGA 972 0.3827 MDGEQKGSKSDYNFPPGFRFHPSDEELIVHYLQNKIKSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWFFFSPRDRKYPNGLRPNRTAASGYWKATGTDKPIISSCGSKHIGVKKALVFYSGRPPKGGKTDWIMNEYRLVDTTMRSFRLKGSMRLDDWVLCRVRHRGYSLKNLSDNQENHCEPSKPVNLQKGEEQQTNTSFRADMITDYQYKDYQIIASILVGGVIPPTENMSSLSFKEMRSNNLTSVYEESFDKMNSQTTIPSLECYFNPLKRKFNEDDEQLENLISFNSKFNIENKIEKSPSIDFQELNKLTFAERYQQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01425 323 Gene3D NAC domain 23 171 IPR036093 GO:0003677|GO:0006355
Vifa1g01425 323 PANTHER NAC TRANSCRIPTION FACTOR 56 14 217 - -
Vifa1g01425 323 SUPERFAMILY NAC domain 11 168 IPR036093 GO:0003677|GO:0006355
Vifa1g01425 323 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Vifa1g01425 323 MobiDBLite consensus disorder prediction 177 198 - -
Vifa1g01425 323 FunFam NAC domain-containing protein 72-like 23 173 - -
Vifa1g01425 323 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01425 Vifa-Chr1 233041546 233042717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01425 13 165 NAC Transcription Factor Family AT1G61110 68.323 8.90e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g01425 NAM 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01425 - - gmx:100817193 490.345