Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01424 ATGGACGGAGAACAAAAGGGATCCAAATCGGATTACAATTTTCCGCCCGGTTTTAGATTCCATCCTTCTGATGAGGAACTCATAGTTCATTACCTGCAAAACAAAATCAAATCGCGTCCGCTTCCAGCATCTATTATAGCCGAGATTGATCTCTACAAATATAATCCATGGGAGTTACCAAATAAGTCTTTGTTTGGAGAGGAAGAATGGTTTTTCTTTAGTCCGAGAGACCGAAAGTATCCGAATGGATTAAGGCCAAATAGAACAGCAGCTTCAGGTAGACCTCCTAAGGGTGGTAAGACAGATTGGATCATGAATGAATATAGGTTGGTTGACACAACCATGAGATCGTTCAGACTAAAAGGTTCCATGCGGTTGGATGACTGGGTATTATGTCGGGTTCGACATAGAGGCTACTCGTTGAAGAATTTATCTGATAATCAAGAGAATCATTGTGAACCAAGCAAACCAGTAAACCTACAGAAGGGTGAAGAACAACAAACGAATACGAGTTTTCGAGCTGACATGATTACAGATTATCAATACAAAGATTATCAGATCATAGCCTCTATTCTTGTTGGAGGAGTTATACCTCCAACTGAGAACATGTCAAGTTTGAGCTTTAAGGAAATGCGAAGCAACAATTTAACTTCGGTTTATGAAGAAAGTTTCGATAAAATGAATTCTCAAACCACAATCCCTTCTTTGGAATGTTACTTCAACCCGCTGAAAAGAAAATTTAATGAGGATGATGAACAGTTGGAAAATCTCATTTCTTTTAATAGCAAATTCAACATTGAGAACAAAATAGAGAAATCTCCAAGCATCGATTTTCAAGAACTAAACAAATTAACCTTTGCAGAAAGATATCAGCAGTGA 879 0.3788 MDGEQKGSKSDYNFPPGFRFHPSDEELIVHYLQNKIKSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWFFFSPRDRKYPNGLRPNRTAASGRPPKGGKTDWIMNEYRLVDTTMRSFRLKGSMRLDDWVLCRVRHRGYSLKNLSDNQENHCEPSKPVNLQKGEEQQTNTSFRADMITDYQYKDYQIIASILVGGVIPPTENMSSLSFKEMRSNNLTSVYEESFDKMNSQTTIPSLECYFNPLKRKFNEDDEQLENLISFNSKFNIENKIEKSPSIDFQELNKLTFAERYQQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01424 292 Pfam No apical meristem (NAM) protein 15 94 IPR003441 GO:0003677|GO:0006355
Vifa1g01424 292 ProSiteProfiles NAC domain profile. 14 157 IPR003441 GO:0003677|GO:0006355
Vifa1g01424 292 Gene3D NAC domain 93 140 IPR036093 GO:0003677|GO:0006355
Vifa1g01424 292 Gene3D NAC domain 23 92 IPR036093 GO:0003677|GO:0006355
Vifa1g01424 292 PANTHER NAC TRANSCRIPTION FACTOR 56 93 181 - -
Vifa1g01424 292 MobiDBLite consensus disorder prediction 146 167 - -
Vifa1g01424 292 SUPERFAMILY NAC domain 11 137 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01424 Vifa-Chr1 233041546 233042717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01424 8 172 NAC Transcription Factor Family AT1G77450 47.500 8.51e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g01424 NAM 5.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01424 - - gmx:100817193 413.305