Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01423 ATGCTGTCTGATGAAGCTGTTTCAGCTTCTTCCAACCTCATCAGAAGCACCTCAAACTCAAGCCCTAACCCTCCTAACCCTAATAAGAGAAAAAGAAGTCTACCAGGAACACCAGATCCGACATCAGAAGTGATTGCTCTATCACCAAAGTCACTGATGACAACAAACCGTTTCATCTGCGAAGTATGCAACAAGGGTTTCAAGAGAGACCAAAACCTGCAGCTACATCTGCGAGGGCACAATCTTCCATGGAAGCTTAAGCAAAGAAACCATCAGGAGGTGATAAGGAAGAAGGTGTATGTTTGTCCAGAGAAGAGCTGTGTGCACCATGACCCTTGTAGAGCTTTAGGTGACTTGACAGGGATAAAGAAGCACTTTAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATAGTAAGATTTGTGGTACTAGAGAGTACAGATGTGACTGTGGTACACTATTCTCCAGGAAGGACAGTTTCTTAACACATAGAGCCTTTTGTGAATCCTTGGTGGAAAGAAGTGCAAGAATAATAGGTTCAGCTCCAGCAGTTTTATCCAACTTTGGAAACAATCTTCTGATCAACAACACTCAAGCTCAAGCACCAAGAATTCCTCATGGTTTATTTGGGCTTAATCAGGAGTTTGGTGGACCAGTTCCAGAAACATTCATGGGAAATTTTCTCAACAATAATCCTCAACATCATCAGATGAACATCCCTCATCATAACTATCTTCCAAGCAACTCCACTACTACAACTAGTGTATTCTCATCATCAGAAGCAAACTCTGATTTAGAATTACTTCAGACAAACATGAATTCGTTCGGTTCAATACCACATGGACAATGGATGAATTATCGTTACCCCGAGCAACAAGAAGTATCTATGCCTATGCTTACTCAAGGAGTACTAAAGCTAGAACAAGAAGAAAACAACAAAATGCATGATTTGTCTCATTTGTATTATCAGAACCAATTACAAGGAGGTTTACAAGGAGGTCCAAGTCACGCGATGGAATCCACAACTAGAAAGATGAACAATGGGAATAATTCTGCACCTCCCAACATTGTTGAAATCAAGAAACTGTTCAAGCAAGGAAACCATGCAGGAAATTTGAATGAAGATCAACTAAGCTTAACTAGAGATTTCCTTGGAGTTGGAGTTGGAGATGATTCATTGAAGAAACCGTTGTTGCAACAAGAGGTCCCTAGGTTCAATCCAATAGGACCTATCATGAACATGCAAAGTGATCAGTTTGGTGGACACTATTGA 1320 0.4068 MLSDEAVSASSNLIRSTSNSSPNPPNPNKRKRSLPGTPDPTSEVIALSPKSLMTTNRFICEVCNKGFKRDQNLQLHLRGHNLPWKLKQRNHQEVIRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFLTHRAFCESLVERSARIIGSAPAVLSNFGNNLLINNTQAQAPRIPHGLFGLNQEFGGPVPETFMGNFLNNNPQHHQMNIPHHNYLPSNSTTTTSVFSSSEANSDLELLQTNMNSFGSIPHGQWMNYRYPEQQEVSMPMLTQGVLKLEQEENNKMHDLSHLYYQNQLQGGLQGGPSHAMESTTRKMNNGNNSAPPNIVEIKKLFKQGNHAGNLNEDQLSLTRDFLGVGVGDDSLKKPLLQQEVPRFNPIGPIMNMQSDQFGGHY 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01423 439 MobiDBLite consensus disorder prediction 1 42 - -
Vifa1g01423 439 SMART c2h2final6 58 80 IPR013087 -
Vifa1g01423 439 SMART c2h2final6 100 130 IPR013087 -
Vifa1g01423 439 SMART c2h2final6 135 155 IPR013087 -
Vifa1g01423 439 MobiDBLite consensus disorder prediction 344 368 - -
Vifa1g01423 439 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g01423 439 FunFam protein indeterminate-domain 12-like 37 106 - -
Vifa1g01423 439 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vifa1g01423 439 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 411 IPR031140 -
Vifa1g01423 439 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Vifa1g01423 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vifa1g01423 439 Gene3D Classic Zinc Finger 109 191 - -
Vifa1g01423 439 Gene3D Classic Zinc Finger 36 108 - -
Vifa1g01423 439 Pfam Zinc-finger double-stranded RNA-binding 58 80 IPR022755 -
Vifa1g01423 439 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01423 Vifa-Chr1 232682845 232684670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01423 29 203 IDZ Gene Family AT3G45260 83.051 7.32e-109 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g01423 zf-C2H2_jaz 7.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01423 K25870 - gmx:100811687 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01423 1 232682845 232684670 Vifa1g01423 1 232682845 232684670 ECH
Vifa1g01423 1 232682845 232684670 Vifa6g00632 6 239574367 239576210 PCT