Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01413 ATGGCGGATTATAGGAGTTTTTCATTTACTAAAATGATTGGCTGCTGGAGTTGCTTCGGGTTGATAAAGAAACAACCTAGACGCAGACGGACTAGGCGGAGCATAAAGAATTATCTCTCTCAGGGGCTGTTGACGGATGGAGAAACGGAGTGTGATGAGGTATCACATAGTGGAGATTATACTAGTAACAATACTAGTGGAGATGATAGTGATGTGCAAAATTTACCCAACCGTTCGGAGGATATTTTGAACTTTAGAGCAGAGAATGGCATGATTTGTAGGCCTTTTCCTGCTAAGGAGACTGACAAGCTTGTTCGATCTGAGGATGAAGACGGGAACAAGATGTTAAATGAATATATTCGAGAGTATAAGATTGGTTCTGGTAGCTATGCCAAAGTGGCTCTTTACCAAAGTAGTATCGATGGACGACATTATGCAATTAAGTCCTTTCATAAGTCTCACTTACGAAAGCTTCGAGTGGCTCCATCTGAGACTGCCATGACAGATGTACTACGTGAGGTACTCATCATGAAAATGTTGGAACATCCTAATATCGTTAATCTCATCGAGGTGATTGATGACCCGGAGTCGGATGACTTCTACATGGTACTTGAATACGTGGAAGGCAAATGGGTTTGCGAGGGTTCAGGTCGTCAATGTGCCATTGGTGAAGAGACTGCTAAAAAATACATGCGTGATATAGTCTCGGGATTAACTTATCTTCATGCTCATAATATAGTGCACGGGGATATAAAACCTGATAATCTGTTGATTACCCGCAATGGGACTGTAAAAATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGACGGTAACGATGAGCTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGCTGTTTAGGTCTTACTTATCACGGCAAAGCTTCTGACACATGGGCAGTAGGAGTAACTTTGTACTGTATGATACTGGGCGAATACCCATTTCTCGGAGACACACTTCAAGATACATACGACAGAATAGTCCATAATCCCATAGAAATTCCGGATGACATAAACCCGCAGTTAAAGAACTTAATAGAAGGATTGCTTTGCAAAGACCCAGAACAAAGGATGACTTTGACTGAAGTTGCTGAGCATGATTGGGTTATTGGAAATGACGGGCCAATCGGTAAGTACTCGTGTTGGTGCAAACGCAAGAGTCTGGTGATTGAAGACTTTGAGGAGAGCAATGTGGTTGCTTGA 1236 0.428 MADYRSFSFTKMIGCWSCFGLIKKQPRRRRTRRSIKNYLSQGLLTDGETECDEVSHSGDYTSNNTSGDDSDVQNLPNRSEDILNFRAENGMICRPFPAKETDKLVRSEDEDGNKMLNEYIREYKIGSGSYAKVALYQSSIDGRHYAIKSFHKSHLRKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDDFYMVLEYVEGKWVCEGSGRQCAIGEETAKKYMRDIVSGLTYLHAHNIVHGDIKPDNLLITRNGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDRIVHNPIEIPDDINPQLKNLIEGLLCKDPEQRMTLTEVAEHDWVIGNDGPIGKYSCWCKRKSLVIEDFEESNVVA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01413 411 ProSiteProfiles Protein kinase domain profile. 119 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01413 411 FunFam Serine/threonine-protein kinase GRIK2 109 411 - -
Vifa1g01413 411 MobiDBLite consensus disorder prediction 56 73 - -
Vifa1g01413 411 SMART serkin_6 119 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01413 411 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 70 382 - -
Vifa1g01413 411 MobiDBLite consensus disorder prediction 52 73 - -
Vifa1g01413 411 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Vifa1g01413 411 SUPERFAMILY Protein kinase-like (PK-like) 115 386 IPR011009 -
Vifa1g01413 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Vifa1g01413 411 Pfam Protein kinase domain 121 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01413 411 CDD STKc_LKB1_CaMKK 125 380 - -
Vifa1g01413 411 FunFam Serine/threonine-protein kinase Ssp1 113 215 - -
Vifa1g01413 411 Gene3D Transferase(Phosphotransferase) domain 1 217 387 - -
Vifa1g01413 411 Gene3D Phosphorylase Kinase; domain 1 113 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01413 Vifa-Chr1 230267919 230270817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01413 109 386 CBL-interacting serine-threonine protein kinases AT5G10930 32.155 7.33e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Vifa1g01413 Pkinase 7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01413 K00908 - gmx:100776013 701.434