Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01412 ATGCTTTCAGGGGACATACCTCCAAATCAAACCATTTACGTTAAGAATCTCAATGAAAAGGTCAAGAAAGATGAGTTGAAGAGATCTCTGTACTGCTTATTCTCTCAATATGGAAGGATTTTGGATATTATTGCTCTAAAGACACCTAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTAACTGCTGCCAGTAACGCAGTGCGACAGATGCAAAATTTCCCATTTTATGAAAAACCCATGAGAATTCAATATGCAAAAACAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGTTTTGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGAGAAAAAGAGGTACACTGAGGAACCAAAACCATCTTCTGTGCCAAATGGAACACACGGTGCAAGTAATGGTGGTCCAACACCCTCATTCCGTCCAGGGTCTAATTCCCAAGAAGCAGCTGCTCCTAACAATATTTTGTTCATAGAGAACTTACCTTACGAAACTACCGGTAGAATGCTTGAAATGCTCTTCGAACAATACCCCGGGTTTAAAGAAGTGCGCTTGATTGATGCAAAGCCAGGTATCGCATTTGTAGATTTTGAAGATGACATACAATCATCCATGGCAATGCAGGCTCTTCAAGGCTTCAAAATCACACCTCAAAATCCCATGATTATAAACTTTGCTAAGAAGTAA 699 0.3977 MLSGDIPPNQTIYVKNLNEKVKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKRYTEEPKPSSVPNGTHGASNGGPTPSFRPGSNSQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIDAKPGIAFVDFEDDIQSSMAMQALQGFKITPQNPMIINFAKK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01412 232 CDD RRM1_U1A_like 11 88 - -
Vifa1g01412 232 Gene3D - 4 115 IPR012677 -
Vifa1g01412 232 MobiDBLite consensus disorder prediction 98 152 - -
Vifa1g01412 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 89 - -
Vifa1g01412 232 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Vifa1g01412 232 Gene3D - 147 232 IPR012677 -
Vifa1g01412 232 CDD RRM2_U1A_like 156 227 - -
Vifa1g01412 232 MobiDBLite consensus disorder prediction 125 152 - -
Vifa1g01412 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Vifa1g01412 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Vifa1g01412 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Vifa1g01412 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Vifa1g01412 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
Vifa1g01412 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Vifa1g01412 232 FunFam U2 small nuclear ribonucleoprotein B'' 149 232 - -
Vifa1g01412 232 Coils Coil 102 122 - -
Vifa1g01412 232 SUPERFAMILY RNA-binding domain, RBD 8 221 IPR035979 GO:0003676
Vifa1g01412 232 MobiDBLite consensus disorder prediction 98 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01412 Vifa-Chr1 229759110 229765467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01412 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 22.034 3.73e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01412 K11094 - gmx:100805822 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01412 1 229759110 229765467 Vifa1g01412 1 229759110 229765467 ECH