Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01405 ATGAAGTTGAACGTTTCGAATCCCACCACTGGATGCCAGAAGAAGCTTGAAATTAATGATGACCAGAAGCTTCGTGCTTTTTGGGACAAGAGGATCTTTCAGGAAGTTAATGAAAGGAGTGTTAACTCCGAGTCGCGTTTGCCTCTTGCTTCACTAAGGAACTCCTTATTTCTAAGGACACAAAGGAGAAATGGGGAGCAAAGGAGGAAGTTTGTCCCTGGGTGCATTGTCAGCCCAGATCTATCAATTTTGAACTTGGTGATTATGAAAAAGGGTGAGAATGATTTACCTGGCATGGCCGATGTTGAAAAGCCAAGTATGAGAGGTCCCAAGAGAGCATCCAAAATACGTAAGTTGTTCAACCTGTCTAAGGAGGATGATGTAAGGAAGTATGTCAACACCTACCGTAGAACATTCACAACTAAAGTTGGGAAAAAGAAGAGAAAAGCTCCCAAGATTCAACGTATGGTTACTGCTCTCACTCTCCAAAGAAAGCGAGCAAGATTTTGCTCAAAGAATGAGAGATAG 528 0.4242 MKLNVSNPTTGCQKKLEINDDQKLRAFWDKRIFQEVNERSVNSESRLPLASLRNSLFLRTQRRNGEQRRKFVPGCIVSPDLSILNLVIMKKGENDLPGMADVEKPSMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKVGKKKRKAPKIQRMVTALTLQRKRARFCSKNER 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01405 175 Gene3D - 107 175 - -
Vifa1g01405 175 PANTHER 40S RIBOSOMAL PROTEIN S6 1 43 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vifa1g01405 175 SMART Ribosomal_S6e_2 1 101 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vifa1g01405 175 Pfam Ribosomal protein S6e 61 100 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vifa1g01405 175 Pfam Ribosomal protein S6e 1 44 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01405 Vifa-Chr1 228438154 228438761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01405 62 168 Cytoplasmic Ribosomal Protein Gene Family AT4G31700 81.308 6.95e-57 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01405 K02991 - sind:105176438 241.506