Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01404 ATGGCATCTTCATCTAGTAATTTAGATACCAATAATAATATTAATATTAATATTAATAATATCAATGGTTTGAACTCGTTCAACCATTTTTCATTCTCTTCAACAACTCATCACCCTTTCATGATGACCAGTTCTTTCTCTGACCTTTTAGCTTCTCCTATTGATGAGAATGAAAACATTAACAACAATAACAACAACTCAAGAAATGATGATTATGGTGTTCCTAAGTTCAAGTCTACACCACCTCCTTCTTTGCCTTTGTCACCTCCTCTTCCTTCTTATTTTTCTATTCCTCCTGGTTTGAGTCCAGCTGACTTACTTGATTCGCCTGTTTTGTTGAACTCTAACAATGTTTTGCCATCTCCAACAACTGGTGCTTATGCTGCTCATAGCTACAATTGGAAGAACAATTCTGTGGGGAATCAACAACTTGCAAATTTCTCTTTCCAAACCCAACAAGATCCTGCTGTTTCTGCACCCAACACATCTTTTCAATCATCAAACGTTGGAATTCAACAACAACAACAGCCATGGGGTTATCAAGAAAGCAGAAAGCAAGAAGGTTATTCATCTGGGAACAATATGATGCAACGGGAAAACAACAAGAATGCTATGCAGATTTATTCTGCGGAGTTTGCTAATGTTCAAATGAGCAACGCGATGATGAACAAGAATGGAATTCAATCTGATTACAACAATTACCAACCAGTACCACTTCAACAAGTTCAAACCTTGAGTAAGAAATCAGACGACGGTTACAATTGGAGAAAATACGGACAAAAACAAGTGAAAGGAAGTGAGAATCCGAGAAGCTATTACAAATGCACGTACCCGAATTGTCCTACCAAGAAGAAAGTTGAGAGATCTTTTGAGGGACAGATTACTGAGATAGTTTATAAGGGTACTCATAATCATCCTAAGCCTCAATCTACTAGGAAGAACTCGTCGAATGCTCTGGTGATTGTTCCTGCTAATCCAAATGGTAACGAAATGATTGATCAATCCTATGCGTCACTTGGTAATGGACAAATGGATTCTGGTGCTACGCCTGAGAATTCTTCGATTTCAATTGGCGGAGATGATGATTTTGAGCAGAGTTCTCTTCAAAAGAGTAGATCTGGCGGCGGTGATGAGTATGATGATGATGAGCCTGATACTAAAAGATGGAAAAATGATGTTGAAAATGAGGGAATATCAGGACCTGGAAGCAGAACAGTGAGGGAACCTAGAGTTGTTGTTCAGACAACAAGTGACATTGATATCCTTGATGATGGTTACAGATGGAGGAAATATGGACAGAAAGTTGTCAAGGGAAATCCAAATCCAAGGAGCTACTACAAATGTACACACCCAGGTTGTCCAGTGAGGAAACACGTTGAGCGCGCCTCACATGATTTACGCGCTGTGATCACAACCTATGAAGGGAAGCACAACCATGATGTCCCTGCTGCTCGTGGAAGCGGAAACAATTCCATAAACCGGCCAACGCCAAACAACCCTTCAAATCCAAATAATGCAGCCACTGCCATTTTGCCACTACAGACTCTAAGGCCACAACAACCAGCACAACAGGTTCAATCCAATCCTTTCAACTTAGACATGCTGCAGAATCAAGGAAACCACGGATTTTCAAGGTTTTTGAATCCAATGGAGTCGTACATGAATCCGCCACAACAGCAGCTACATCAACAGCAACAGCATCAGCAACAGCAGCAGCAAATGTCTGACAACGGTTTCTCCTCCAGAGCGAAGGAGGAACCTAAAGACGACACGTTTCTTGAGTCACTGCTATGCTGA 1797 0.409 MASSSSNLDTNNNINININNINGLNSFNHFSFSSTTHHPFMMTSSFSDLLASPIDENENINNNNNNSRNDDYGVPKFKSTPPPSLPLSPPLPSYFSIPPGLSPADLLDSPVLLNSNNVLPSPTTGAYAAHSYNWKNNSVGNQQLANFSFQTQQDPAVSAPNTSFQSSNVGIQQQQQPWGYQESRKQEGYSSGNNMMQRENNKNAMQIYSAEFANVQMSNAMMNKNGIQSDYNNYQPVPLQQVQTLSKKSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSFEGQITEIVYKGTHNHPKPQSTRKNSSNALVIVPANPNGNEMIDQSYASLGNGQMDSGATPENSSISIGGDDDFEQSSLQKSRSGGGDEYDDDEPDTKRWKNDVENEGISGPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGNNSINRPTPNNPSNPNNAATAILPLQTLRPQQPAQQVQSNPFNLDMLQNQGNHGFSRFLNPMESYMNPPQQQLHQQQQHQQQQQQMSDNGFSSRAKEEPKDDTFLESLLC 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01404 598 Gene3D WRKY domain 237 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g01404 598 ProSiteProfiles WRKY domain profile. 417 482 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01404 598 MobiDBLite consensus disorder prediction 57 73 - -
Vifa1g01404 598 FunFam WRKY transcription factor 33 409 475 - -
Vifa1g01404 598 MobiDBLite consensus disorder prediction 537 598 - -
Vifa1g01404 598 MobiDBLite consensus disorder prediction 374 394 - -
Vifa1g01404 598 SUPERFAMILY WRKY DNA-binding domain 248 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g01404 598 ProSiteProfiles WRKY domain profile. 250 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01404 598 MobiDBLite consensus disorder prediction 173 194 - -
Vifa1g01404 598 Pfam WRKY DNA -binding domain 250 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01404 598 Pfam WRKY DNA -binding domain 423 479 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01404 598 MobiDBLite consensus disorder prediction 57 85 - -
Vifa1g01404 598 Gene3D WRKY domain 409 475 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g01404 598 MobiDBLite consensus disorder prediction 478 507 - -
Vifa1g01404 598 MobiDBLite consensus disorder prediction 537 580 - -
Vifa1g01404 598 MobiDBLite consensus disorder prediction 300 404 - -
Vifa1g01404 598 FunFam WRKY transcription factor 240 309 - -
Vifa1g01404 598 SUPERFAMILY WRKY DNA-binding domain 414 482 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g01404 598 MobiDBLite consensus disorder prediction 484 507 - -
Vifa1g01404 598 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 107 552 IPR044810 GO:0003700
Vifa1g01404 598 SMART WRKY_cls 249 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01404 598 SMART WRKY_cls 422 481 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01404 598 MobiDBLite consensus disorder prediction 304 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01404 Vifa-Chr1 228408139 228411438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01404 70 597 WRKY Transcription Factor Family AT2G38470 45.554 8.78e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g01404 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01404 K13424 - gmx:100127385 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03110 2 889510214 889511651 Vifa1g01404 1 228408139 228411438 PCT