Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01401 ATGTTAACCTTTATTACACCGCATATATTTGATGATGTAAAAGGCATAGAGTCCGCGGTGATTGTGGAAAAGGAAAGAAAAAAATACAAAGTAGTTGGAAGTGATGAAACAAAAAAACTCTGTTTCATAAATGCTCAACTTTATCTCATTTCTCACTTCTTTTCCATATATAAACCTTGCTTATACCACTCACTAAATTCATTCATATTTCATATTTCATGTTCTTGTGCTTTTGTTTCTCACCACAATATGACTTCTTCTTGCAAAAGAACACTTTCTCTTCCAATTCACAAGGAAAATTCTCTAATGGAAATACCCTACAAAACTTCAGAAGAATCGTCTGGTTCATCATCATCATTTTCAAACGAATTTGTTGCGATTAAGATGCCATTAACACCGAGTCCAACTCCAACTCACAAGAAGGTGAATTTTCTTGTGACTTCACGTTCTGTTGATGCTGCTCCAATTGTGGATAGTGATAGTAACAATCTAGGGAATTTGACCACAAGAGGAAAATCGTCGAGTGCTAGAAGTATTATGCCGAAATTGAACTTTCCGTATAATAGGACTTCATCATCTGATGTTGAAAAGGCCATAAGTTTGGCTCCGGAAAGTCCTTGTGAGAAGCCTTCTGTCTCTGGATCAGGATCAGTGTCTTTGAGTAAGCTGTTTGCTCCTAAGATTTATAGAACTTCTTCGCTACCGGTTGAAGAAATCGGGCGTGTTAATAATGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAGGGGTCGATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCAAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGAAAATGGCGGTGATGACGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGGATTTGTCTAATTGAGCTATGTGAAGGAGGTGAGACGCTGAAGATGGAATGCAGTTGCAAAGGTGAACTTGCATTGGCTCACCAAGAATGCGCTATCAAGTGGTTCAGTATCAGGGGTAACAAGACATGTGATGTGTGCAAGCAAGAAGTTCAGAATCTCCCTGTCACTCTCTTACGGATCCAAAATGTTCAAACTCAGAATACCGGAGCAAGGTCTCAGCAGGAAGACGACTTCAGGGTTTGGCAGGAGTTACCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTTTGGTTGGAAGAATGAAAACCAGAGCAATTTTCATTTCTCTTCCGTTTTCCTGTGTACTGGGTCTAGTCTCCGCCATGACATCAACAACCATGGTGAGGAATAGGTTCATCTGGCTTTATGCATCTGCACAATTTCTCTTGGTTGTTATCTTCGCACATATATTTTACCCCTTGTTTGGTATCGCGCAGGTTGGTAAGCAAGCAGTTTTAGCAATCCTTCTTGCATCATTTGCTGGATTTGGTGTAATGATGAGCGGAAGTTCAATACTTTCCGAGTTACTCAGATATAGAAGAGCATTTCAAGCTTTAGAGGAGCAGCAGCGCGCTCAAATGATGATGCAAGAAGGACTATATTCTCAAGGTGTAATTACTCCAGAACCAAGCCTTCCCAGCTACAACCAAACTACAGTGCAACTTCAAAATCAAGTGAACTCAAATTCGTAG 1731 0.405 MLTFITPHIFDDVKGIESAVIVEKERKKYKVVGSDETKKLCFINAQLYLISHFFSIYKPCLYHSLNSFIFHISCSCAFVSHHNMTSSCKRTLSLPIHKENSLMEIPYKTSEESSGSSSSFSNEFVAIKMPLTPSPTPTHKKVNFLVTSRSVDAAPIVDSDSNNLGNLTTRGKSSSARSIMPKLNFPYNRTSSSDVEKAISLAPESPCEKPSVSGSGSVSLSKLFAPKIYRTSSLPVEEIGRVNNEFAFGGCLGASPYRSQGSIARTRSEPVDSKEKIIRKMDKFFRIIPSTPGAKEVKEWLKASAEKDTENGGDDGEDIAEEEAVCRICLIELCEGGETLKMECSCKGELALAHQECAIKWFSIRGNKTCDVCKQEVQNLPVTLLRIQNVQTQNTGARSQQEDDFRVWQELPVLVIVSMLAYFCFLEQLLVGRMKTRAIFISLPFSCVLGLVSAMTSTTMVRNRFIWLYASAQFLLVVIFAHIFYPLFGIAQVGKQAVLAILLASFAGFGVMMSGSSILSELLRYRRAFQALEEQQRAQMMMQEGLYSQGVITPEPSLPSYNQTTVQLQNQVNSNS 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01401 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 381 IPR013083 -
Vifa1g01401 576 SMART ringv_2 325 374 IPR011016 GO:0008270
Vifa1g01401 576 ProSiteProfiles Zinc finger RING-CH-type profile. 318 380 IPR011016 GO:0008270
Vifa1g01401 576 SUPERFAMILY RING/U-box 322 377 - -
Vifa1g01401 576 CDD RING_CH-C4HC3_MARCH 326 374 - -
Vifa1g01401 576 PANTHER OS02G0165000 PROTEIN 97 539 - -
Vifa1g01401 576 Pfam RING-variant domain 326 373 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01401 Vifa-Chr1 227494187 227497143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01401 314 380 C3H Transcription Factor Family AT2G37950 42.647 3.41e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01401 - - cam:101488558 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01401 1 227494187 227497143 Vifa1g01401 1 227494187 227497143 ECH
Vifa1g01401 1 227494187 227497143 Vifa6g00616 6 237606652 237609295 PCT