Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01400 ATGTTAACCTTTATTACACCGCATATATTTGATGATGTAAAAGGCATAGAGTCCGCGGTGATTGTGGAAAAGGAAAGAAAAAAATACAAAGTAGTTGGAAGTGATGAAACAAAAAAACTCTGTTTCATAAATGCTCAACTTTATCTCATTTCTCACTTCTTTTCCATATATAAACCTTGCTTATACCACTCACTAAATTCATTCATATTTCATATTTCATGTTCTTGTGCTTTTGTTTCTCACCACAATATGACTTCTTCTTGCAAAAGAACACTTTCTCTTCCAATTCACAAGGAAAATTCTCTAATGGAAATACCCTACAAAACTTCAGAAGAATCGTCTGGTTCATCATCATCATTTTCAAACGAATTTGTTGCGATTAAGATGCCATTAACACCGAGTCCAACTCCAACTCACAAGAAGGTGAATTTTCTTGTGACTTCACGTTCTGTTGATGCTGCTCCAATTGTGGATAGTGATAGTAACAATCTAGGGAATTTGACCACAAGAGGAAAATCGTCGAGTGCTAGAAGTATTATGCCGAAATTGAACTTTCCGTATAATAGGACTTCATCATCTGATGTTGAAAAGGCCATAAGTTTGGCTCCGGAAAGTCCTTGTGAGAAGCCTTCTGTCTCTGGATCAGGATCAGTGTCTTTGAGTAAGCTGTTTGCTCCTAAGATTTATAGAACTTCTTCGCTACCGGTTGAAGAAATCGGGCGTGTTAATAATGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAGGGGTCGATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCAAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGAAAATGGCGGTGATGACGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGGATTTGTCTAATTGAGCTATGTGAAGGAGGTGAGACGCTGAAGATGGAATGCAGTTGCAAAGGTGAACTTGCATTGGCTCACCAAGAATGCGCTATCAAGTGGTTCAGTATCAGGGGTAACAAGACATGTGATGTGTGCAAGCAAGAAGTTCAGAATCTCCCTGTCACTCTCTTACGGATCCAAAATGTTCAAACTCAGAATACCGGAGCAAGGTCTCAGCAGGAAGACGACTTCAGGGTTTGGCAGGAGTTACCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTTTGGTTGGAAGAATGAAAACCAGAGCAATTTTCATTTCTCTTCCGTTTTCCTGTGTACTGGGTCTAGTCTCCGCCATGACATCAACAACCATGGTGAGGAATAGGTTCATCTGGCTTTATGCATCTGCACAATTTCTCTTGGTTGTTATCTTCGCACATATATTTTACCCCTTGGTTGGTAAGCAAGCAGTTTTAGCAATCCTTCTTGCATCATTTGCTGGATTTGGTGTAATGATGAGCGGAAGTTCAATACTTTCCGAGTTACTCAGATATAGAAGAGCATTTCAAGCTTTAGAGGAGCAGCAGCGCGCTCAAATGATGATGCAAGAAGGACTATATTCTCAAGGTGTAATTACTCCAGAACCAAGCCTTCCCAGCTACAACCAAACTACAGTGCAACTTCAAAATCAAGTGAACTCAAATTCGTAG 1716 0.4038 MLTFITPHIFDDVKGIESAVIVEKERKKYKVVGSDETKKLCFINAQLYLISHFFSIYKPCLYHSLNSFIFHISCSCAFVSHHNMTSSCKRTLSLPIHKENSLMEIPYKTSEESSGSSSSFSNEFVAIKMPLTPSPTPTHKKVNFLVTSRSVDAAPIVDSDSNNLGNLTTRGKSSSARSIMPKLNFPYNRTSSSDVEKAISLAPESPCEKPSVSGSGSVSLSKLFAPKIYRTSSLPVEEIGRVNNEFAFGGCLGASPYRSQGSIARTRSEPVDSKEKIIRKMDKFFRIIPSTPGAKEVKEWLKASAEKDTENGGDDGEDIAEEEAVCRICLIELCEGGETLKMECSCKGELALAHQECAIKWFSIRGNKTCDVCKQEVQNLPVTLLRIQNVQTQNTGARSQQEDDFRVWQELPVLVIVSMLAYFCFLEQLLVGRMKTRAIFISLPFSCVLGLVSAMTSTTMVRNRFIWLYASAQFLLVVIFAHIFYPLVGKQAVLAILLASFAGFGVMMSGSSILSELLRYRRAFQALEEQQRAQMMMQEGLYSQGVITPEPSLPSYNQTTVQLQNQVNSNS 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01400 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 381 IPR013083 -
Vifa1g01400 571 SMART ringv_2 325 374 IPR011016 GO:0008270
Vifa1g01400 571 ProSiteProfiles Zinc finger RING-CH-type profile. 318 380 IPR011016 GO:0008270
Vifa1g01400 571 CDD RING_CH-C4HC3_MARCH 326 374 - -
Vifa1g01400 571 PANTHER OS02G0165000 PROTEIN 97 534 - -
Vifa1g01400 571 Pfam RING-variant domain 326 373 IPR011016 GO:0008270
Vifa1g01400 571 SUPERFAMILY RING/U-box 322 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01400 Vifa-Chr1 227494187 227497143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01400 314 380 C3H Transcription Factor Family AT2G37950 42.647 3.27e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01400 - - cam:101488558 689.108