Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01399 ATGCCTTCATTATCAAATCTCCATCTTCCAATCTTCATATTTTCTTCATCACCTAGTGAAAAAGAAAACAAGTGTCTCCCCCATCACGAATGTCAAACAGTCGGTGAAGACGACAACCATTCCAGCGGTGGCGCAGCCGCTCAGAAACTGAACTCTTATGGCGACGGAGCTACCATTGAGGTTGTCAGGTGGCCTAGAGGATGTCCCCCTGGATCTAAAAACAGGCCTAGACATCCTGTAATCATAACACGCAATCCTGAACCTTCTATGAGTCCTTTTATTCTAGAAGTTTCTGCAGGAAATGACTTCGTTCAAGCGGTTGCTGAGTTTAGTCATCGTAGAAACATTGGTTTATGTGTTCTAACTGCTTCATGA 375 0.44 MPSLSNLHLPIFIFSSSPSEKENKCLPHHECQTVGEDDNHSSGGAAAQKLNSYGDGATIEVVRWPRGCPPGSKNRPRHPVIITRNPEPSMSPFILEVSAGNDFVQAVAEFSHRRNIGLCVLTAS 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01399 124 ProSiteProfiles PPC domain profile profile. 87 124 IPR005175 -
Vifa1g01399 124 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 124 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01399 Vifa-Chr1 227315105 227316547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01399 55 124 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 58.571 2.23e-24 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01399 - - adu:107460948 130.954