Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01397 ATGAGTGATAGTACCGTAAACTCGACCGTTAATGCTATTTCAACAAATGGAACAATATGGATTTGTGAACATATGTCCAAGAATCCAAGGTCAAGAGGAATTTTCTTTTCGGATAATCCATTTAGTTACACATTGCCGGTTCTCCTTATACAAATCTCTTTAGTTTCTAGCTTGACTGCAACTTTACAATTCTTACTTCAACCTATTGGGGAGACTAGATTCTTTTCACAAATGTTGGCTGGCATGATGTTAGGACCATCAGTTATAGGACAAAGTGCATTTCTACAAAAGTGGCTATTTCCACCAAAAACATTCTACATAAGTAAGACAATTGCCTTCTTCGGAGGCATGATGTTTATGTTCTTAATCGGAGTAAAAATTGATCTAAGTATCGTTGCAAGATCTGGGAAAAAAGCTTGGGCAATTGGAGTATTGACATTTTTCATTCCACTATTGTTCAGTTCAATTGTTTTTTTTTTTGTAAAAGAAACATTACCTCCTGATCATCCTCTCTATAGTTCCTTATTTTCCATCACATTCATCTTCTCAAGTGGTTCATTCCATGTAACCACAATCCACCTAGCAGATTTAAAGCTATTAAACTCTGAAATGGGTCGATTAGCAATATCTTCCTCAATGGTTAGTGGAACTATTTCATTAACGGTTGTTAGCGCGGTGATAACCCATGAAAACATATTTTCCATGGAAGATAAGACTGCTAACTTGATGGGGTTGAGTTTGTTTGTTATGATTACTATCATAGTTTGTATTTTACGTCCTATAATGTGTTGGATGATAAGACAAACACCTGAAGGTAGACAAATGAAGGAATCATACATAATGTCGGTGTTTTTAATGTTAATCGGCTGTGCGTTTTTTAGCGAAGTTATCGGGCAACATGTTCTGATTTTACCTATCATTTTAGGCATAGCTGTACCTGAAGGTCCTCCGTTGGGATCAGCATTGACTGATAGATTGGATACATTGGTTTCAAATATTTTTTTGCCATTGTATTTTCTTTATAGTGGTTCTAACTTCAATGTTTTTCTAATTGATGGTCATACATTTGCAATTATTCAACTTCTTGCTATTGTTGCATTCATTGGGAAGGTCGTAGGAACTATATTGCCTTCAATTTATTGGAAGATGCCAATGACAGATGTTATAGCTTTAGGACTACTTATGAGTGCTCAAGGCATCACGCAAGTGATTTACTTGCAAAACGGTCTAAATATTACAATAGATGAACAATCGTATGGTAATGCGTTGATAGCATTAGCATGGTTAACAGGAGTCACCACTCCCTTTGTGAAATTCTTATATGATCCTTCTAAGAGGTATTTGTCTTTAAATAGGAGAAGAACCATCGAACAATCAACTCAAGATATTGAACTGCGTCTCATGGCGTGTATACATAATCCAGAAACCACGCCTTCTATAATCAATCTTCTTGAAATTTCAAACCCTTCATTGGAATATCCTATTTGTTTCTATGTTCTACATCTTATTCAACTAAGAGGAAGATCAACCCCGGTTTTTATAGATCATCAATCGACTAGTAAGAAGAATCCTTCGCAAAATAATTACTCCCAACACATAATAAATGCGTTTCGATCCTACGAGCAACAAAAATCAAACAATCTTGTTGTGAAACTCTACACATCGATTTCACCTTACGAGACAATGCATGATGAAATATGTATGCAAGTTGCTGAAAAGAGAGTTTGTATGTTGATTGTACCTTTTCATGTACAATGGAAATCGAATGGGATAACAGAATCCACACACCCAATTAGGGCATTAAATCGCCAGCTTCTCAGGACAGCACCTTGTTCTGTTGGGATTCTAATCGAGCGCGGTACTTTGAATATAAGCCATCCTCTAACTAATGTCGCCTTTTATAGTGTTGGAATAGTCTTTATAGAAGGCAACGACGACCGTGAAGCCTTAGCATATGCAATGCGAATGGCAAACAACCCGGTCGTAAGGGTCACATTGGTTCGACTAATGGAGCCTCGAAAGAAAAATAAGAACTTTATCAACAAGGATCCGGACGGGGATTTGATTCATAAGTTTAAAGTGGATTGCATCCAAATTAAACGACATGATTATAAAGAGGAAATAGTAAGGGATAGTGTTGAAATGATAAATGTTATAAAATCACTTGAAGGTTGTTTTGATTTACTTTTAGTTGGTAGAAGACATGCAAGTGATTCATGTTTGTTTAGTGGATTAACTGATTGGAATGAGTATCTTGAACTTGGACCTATTGGTGACATGTTAGTGGCTTCAGATTCTACTTATGATGGTTCTGTTATGGTAATTCAACAACAAAAACGATCAGGGGTTGATTATCATGATTTGCATTTAGATTATGGTGTTTTATTAAAGGAAGAAAAGTTAACCATTACGGAAGTTCCTCGTGATAGAAAGGTGTGGCCAATTGTTTAA 2451 0.3607 MSDSTVNSTVNAISTNGTIWICEHMSKNPRSRGIFFSDNPFSYTLPVLLIQISLVSSLTATLQFLLQPIGETRFFSQMLAGMMLGPSVIGQSAFLQKWLFPPKTFYISKTIAFFGGMMFMFLIGVKIDLSIVARSGKKAWAIGVLTFFIPLLFSSIVFFFVKETLPPDHPLYSSLFSITFIFSSGSFHVTTIHLADLKLLNSEMGRLAISSSMVSGTISLTVVSAVITHENIFSMEDKTANLMGLSLFVMITIIVCILRPIMCWMIRQTPEGRQMKESYIMSVFLMLIGCAFFSEVIGQHVLILPIILGIAVPEGPPLGSALTDRLDTLVSNIFLPLYFLYSGSNFNVFLIDGHTFAIIQLLAIVAFIGKVVGTILPSIYWKMPMTDVIALGLLMSAQGITQVIYLQNGLNITIDEQSYGNALIALAWLTGVTTPFVKFLYDPSKRYLSLNRRRTIEQSTQDIELRLMACIHNPETTPSIINLLEISNPSLEYPICFYVLHLIQLRGRSTPVFIDHQSTSKKNPSQNNYSQHIINAFRSYEQQKSNNLVVKLYTSISPYETMHDEICMQVAEKRVCMLIVPFHVQWKSNGITESTHPIRALNRQLLRTAPCSVGILIERGTLNISHPLTNVAFYSVGIVFIEGNDDREALAYAMRMANNPVVRVTLVRLMEPRKKNKNFINKDPDGDLIHKFKVDCIQIKRHDYKEEIVRDSVEMINVIKSLEGCFDLLLVGRRHASDSCLFSGLTDWNEYLELGPIGDMLVASDSTYDGSVMVIQQQKRSGVDYHDLHLDYGVLLKEEKLTITEVPRDRKVWPIV 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01397 816 PANTHER CATION/H + ANTIPORTER 25 780 - -
Vifa1g01397 816 Pfam Sodium/hydrogen exchanger family 54 437 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vifa1g01397 816 Gene3D - 47 447 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01397 Vifa-Chr1 226827968 226830768 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01397 31 788 Antiporter Super Family AT2G13620 35.108 1.53e-153 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01397 K26731 - mtr:11413669 1027.7