Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01390 ATGGTTTTCATGCTGAACCAATTTTTGACAAGTCGGATGAAGCCAATTATATGGAGATTTGAGTGTTTTGTTTCTTCCGTGGTTGGACTGCTCTGTTATGCTCTTAGCTCTTCCTTCAATAATCTATTTGGGAAGTGGAACTTTTTCAAGGTATTTCTTTATATCATGTTCAGTTTCACTATCTGCCTGGCTGTCTTGTTTGCAAAAACATGCCACAACTCGAACTCGAACACTAGTCATCGACTCAAAGCTCATTTAGTATTCTCGGTTTTCACAATCACTACAATTTATTCCTTCTTTTTTGATAAAGCTAATGGAAAACCAGATTTGTACAGTCTTATTTCGTGTGCTGCTTTTGCCATCATGTCTCTCAGTTTGTCAAAGCTAACAAACTTGGGTTTTGAGGTTGATCTCCTATACTTTTTTTGTGGTTATCTAACTTTACAGCTCATGAAAATCAAATTGTTTCTAGTCATTGTTGGAGTGATTTTCAGTTATTTTCTCATCATCCTTCGTTTTTATTTGGGCAACCAAACCGAAATTGTGCATCATAGACTCCAAGTCCATGAACAACATTCTGTAGTCATTCAAGTCCAAGCAGATTCTGCAGAATCCAGCACTGCTTCAGAAAACGTCCATGTTATCATACGAGAAGAAGCCAATAATTCTGAAAGTTCTCGAGTCAATTCCGGTCAAGAAAACATGGATATAAGACCAGTCGTTCATTTCAATTCAATACCACAACAACACAATAGCGATGATAAAGGTCGTATAAAGTTGGAGAAATATACAAGGGCTCTCACTAAGATGAACGAGAAGCTTAATCAAATGATTTGGAAGGAGCTTATTGATAATATTAATAATAACAATAATAATAATGAGTACATGATTTGGCAGCATTCCTACAAAATCACTGGGATGGAGAAAGTTATAGACGGCCTAAACAAAATTGTGAGGAAGATGGTGAAGGCTGGGTTTAAAACACAGTCTTGCGAAGTGTACAACATTTTCCGAAACAATTTCTTGAACATGTGCCTATGTAGACTTGGATTGCAGGATGTCAATTTGTATGACTTTGAGAATAAGAGTATTCAGAGTTTGGTTAACGCTTTTTACATGACTCTGAGAATACTTCTTCCTAATGAGAGAAGAATTTGGGGCCGCGTCTTTTCTGGGTTCTCTCTTGACTGTTGCATTTTTTCCAAGTCAGAATGGAGGAGAGTGGAAATTGAGTTGTGGACAAAACTATTAGTGTCAGAGACGCATAGTTGCTACAATAGGTTGAAGGATACTTTTCTCGGTTGTGAGGTTCATCCCTTTACTCATGAAGTTATGAACTGCATCCGCAATGTTTCTGAAGATCACGATAATGCAGCTAATTTCCACATCCATGAACTGATACAACTATTACATAGTAATTTGGTTGCAAAATCAAAAAACTGTACAGACCCTGCTTTAAGGAACCTTTTCATGTTGAATAACAATAGGTACATAGAATTGGTGGCAAGATATGGTCCCTTGAAAACCCTTTTGGGCGAAGAGTGGACTCAAAAGCAAACTTCACGAGTACACAGAAACATTAGAAAGTATACAGGATGCTCATGGAATAAGGTTCTTAACTTAATAAAGAAAAGTGAGTCAATGGCCCCTAATGTAGAATCAATGAGATTGTTCAATATCTACTTTTCAGATATATGCAAGCTTCAGAATTGTTTTATTGCTGATAAGGGTATAAGGGAATCAATGCAAAGGTCCGTGAATAAGATTTTATTGCCACAGTATGAAAAATTCATTGGTAGGTTCAAAGATGTTCATGGGAAGGATGTTGTTGATATGTATGTTAAGTACGGAATGTCAGACATTGAAGATGGGCTCTATTATTTCTTTCATGGAAGTGATTTGGAGAAGAGGAAATCGTTCATGGCCGCTCACAGTCACAATGTAGTCAACAGGTTCCTCGCTAGTGTGTAG 1971 0.3714 MVFMLNQFLTSRMKPIIWRFECFVSSVVGLLCYALSSSFNNLFGKWNFFKVFLYIMFSFTICLAVLFAKTCHNSNSNTSHRLKAHLVFSVFTITTIYSFFFDKANGKPDLYSLISCAAFAIMSLSLSKLTNLGFEVDLLYFFCGYLTLQLMKIKLFLVIVGVIFSYFLIILRFYLGNQTEIVHHRLQVHEQHSVVIQVQADSAESSTASENVHVIIREEANNSESSRVNSGQENMDIRPVVHFNSIPQQHNSDDKGRIKLEKYTRALTKMNEKLNQMIWKELIDNINNNNNNNEYMIWQHSYKITGMEKVIDGLNKIVRKMVKAGFKTQSCEVYNIFRNNFLNMCLCRLGLQDVNLYDFENKSIQSLVNAFYMTLRILLPNERRIWGRVFSGFSLDCCIFSKSEWRRVEIELWTKLLVSETHSCYNRLKDTFLGCEVHPFTHEVMNCIRNVSEDHDNAANFHIHELIQLLHSNLVAKSKNCTDPALRNLFMLNNNRYIELVARYGPLKTLLGEEWTQKQTSRVHRNIRKYTGCSWNKVLNLIKKSESMAPNVESMRLFNIYFSDICKLQNCFIADKGIRESMQRSVNKILLPQYEKFIGRFKDVHGKDVVDMYVKYGMSDIEDGLYYFFHGSDLEKRKSFMAAHSHNVVNRFLASV 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01390 656 Coils Coil 260 280 - -
Vifa1g01390 656 SUPERFAMILY Cullin repeat-like 257 629 IPR016159 -
Vifa1g01390 656 PANTHER EXOCYST COMPLEX PROTEIN EXO70 253 397 IPR004140 GO:0000145|GO:0006887
Vifa1g01390 656 Gene3D Exocyst complex component Exo70 420 638 - -
Vifa1g01390 656 Gene3D Exocyst complex component Exo70 211 403 - -
Vifa1g01390 656 Pfam Exo70 exocyst complex subunit 454 623 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01390 Vifa-Chr1 225670818 225672788 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01390 310 632 EXO70 exocyst subunit family AT5G58430 28.230 6.54e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01390 - - psat:127118472 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01390 1 225670818 225672788 Vifa1g01390 1 225670818 225672788 ECH