Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01389 ATGCAATTGCTTTTGAGGATAAGGCTGCCTCTACTCATAATGATTCAAATGTTAGTATACCTCAACAAATCAACCTGCAAATTATCTTGTGGAGTAAAAGAAAAGATAGACAGCAACAATGAAATTCCAATACTTACACTATCCGTAAAAGAATGTCAAGAGAAAAAACAAGGAGGAGGAAGAAGAGTCGCGGCCGTGGTTGGTGGTGCTAGCGCTGCTTTAGTCATCGTTGTCACTGTGGTGATTATCTATATCTGTTTGAGAAGATATATAAGACTTAAAAGACAAACATCTGATTCTGCTTCTTCTGTACCATCTCAAGCCGTTGAGATGGGAAGAATCAACAGCTCGCAGTATGTTAATGCTTTCTCTCCACATTACATGCAGAGCACGAGATTGTTAACAATTTCGGAGCTGGAACAAGCAACAGGAAACTTCAGTCAAGGTAACATTATAGGCGAAGGAAGATTTGGTTTTGTATACAAAGGTTTGCTTCGAGATGGATCTTTTGTTGCTATAAAAAGACGCATGTTTGCTTTGACTCGAGATTTCATCCCTGAGGTCAAGCTGATAGCTCAAATCCATCATATTCATATTGTCAAGCTTATAGGCTACTATGAAGATAGCTATCAACAATTACTTGTGTATGAGTATCTGCCTAATGGCAATGTAGGGAATCATCTATATGACAATGAAGGTTTACCTACCGGAAAGTTAGACTTGCAGCGTAGGGTATCCATCGCCTTAGGTGCATCCAAAGGACTGGATCATCTTCATGGTTTGGTCCCTCCTATGCTTCACACAAACTTTAGTACAATAAATGTTCTGTTAGATGAAAACTTTACAGCCAAGGTATCTGATTACGGTTTCTTCAAATTGCAAACAAAAGTTGATCAGGCAGGTTCATCTTCAAATGTGGACTACTTTCATGATCCGGAGTTGAGGTTATCAGAAAACTATTCGGAGCAAAGTGATGTATACAGTTTCGGAGTGTTTTTACTCGAGTTGATTAGTGGCTTTGAAGTCCACAACAAAAACATGTCACAACCAGATGAAAATATTATATTTCAGGCGAAATATAGCAGTGTTATGGACGAGTTTATTGACATAACATTGGGAGAGGAAGAAAGAGTTGCTGCTAGACGAATGATGAAGTTGGCTTTACTATGTGTGGATGTGATTCTTAGAAGACCATCAATGGCACATATTGTGCAAGAATTGGAGCGGATACAAAGAGATATTGCTCCTTTGTATTCTGAAATCAATGAGGAGATTGGTGTGGTGACTCTTGGGAGTGAGCTCTTCCAATAG 1311 0.3905 MQLLLRIRLPLLIMIQMLVYLNKSTCKLSCGVKEKIDSNNEIPILTLSVKECQEKKQGGGRRVAAVVGGASAALVIVVTVVIIYICLRRYIRLKRQTSDSASSVPSQAVEMGRINSSQYVNAFSPHYMQSTRLLTISELEQATGNFSQGNIIGEGRFGFVYKGLLRDGSFVAIKRRMFALTRDFIPEVKLIAQIHHIHIVKLIGYYEDSYQQLLVYEYLPNGNVGNHLYDNEGLPTGKLDLQRRVSIALGASKGLDHLHGLVPPMLHTNFSTINVLLDENFTAKVSDYGFFKLQTKVDQAGSSSNVDYFHDPELRLSENYSEQSDVYSFGVFLLELISGFEVHNKNMSQPDENIIFQAKYSSVMDEFIDITLGEEERVAARRMMKLALLCVDVILRRPSMAHIVQELERIQRDIAPLYSEINEEIGVVTLGSELFQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01389 436 FunFam receptor-like serine/threonine-protein kinase NCRK 120 218 - -
Vifa1g01389 436 Gene3D Phosphorylase Kinase; domain 1 106 218 - -
Vifa1g01389 436 Pfam Protein tyrosine and serine/threonine kinase 148 354 IPR001245 GO:0004672|GO:0006468
Vifa1g01389 436 ProSitePatterns Protein kinases ATP-binding region signature. 152 174 IPR017441 GO:0005524
Vifa1g01389 436 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 73 410 IPR047117 -
Vifa1g01389 436 Gene3D Transferase(Phosphotransferase) domain 1 220 419 - -
Vifa1g01389 436 ProSiteProfiles Protein kinase domain profile. 146 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01389 436 SUPERFAMILY Protein kinase-like (PK-like) 125 417 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01389 Vifa-Chr1 225650084 225652304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01389 61 410 Receptor kinase-like Gene Family AT1G79620 33.333 1.44e-50 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Vifa1g01389 PK_Tyr_Ser-Thr 4.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01389 - - psat:127087040 758.059