Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01388 ATGACACCCTTGTTCATCCAAACTCATAGGTGGATGATGCATACAAAGGTGTGGAGATTTGTTGGGTTTGCATCAGCTATTGTTGGATTGCTTTGTTATGCTCTAAGTTCTTCCTTCAACCATCTATTTGGAAATTGGAATTTCTGGAAGATTATTGTTTACACCATTTTCAGTTTCATCATTTGTCTAATTATTTTGTTTGCAAGAACATGGCGAGACTCAAGAAGTCTTCGGTTCAAAGCTCATTCAGCATTTCTGGTATTGGTAATTACATCTGTCTATTCTTTTTTCTCTGATAAAGTTATGAATGGAAAACCAGATGCATATAGTTCCATCTCATATGCTTCCTTTGCTCTCATGTCACTAAGTTTATCAAGGCAAATTCAGTGTGGATTTGAAGTGGATTTTATGTACTTTTATCTAGGATGTTTAATTGTACAACTCCTGAAGTTTAATTTATTGTTGGCTATTCTTGGAGTCTGTTATACCTATTGTCTTATTATTCTTCGGTTTTCTTTCGCTTGCTTAAATGCGACATCAGAGAATCATTCTTTTGGACCTGAAGAACAACTTGTAGGCATTCAAGTTGATTCACAAGAAAGAGAACACTTTTATACAGAGTTGGAACGGTTGTTGCAACAGTTTGGAACATGTATGAAAGATTTACACAAAAACAACTCAAGCATTGACAAAATGCTTTTGGAAAAGGTGAAAGGTAACAATAAATTGGTAGTGACTGACCACAACTTCATAATTGATGCGATTTCACATGAAACAATTAATAACCTTCAAGAAACGGCAAAGTTAATGGTTGAGGCTGGATTTGAAAAAGAGTGCTACGAGGCTTACAACACTTTTCGTAAAGAATGGTTGGAAGAGTTACTAAAGAATAAGTTATTAAGATTGGGGAAGGTGGGATTTCAAGATTACTTAATTGGAAGATGGATAAAAACTTCAGAGGTTGCTCTTAGAGTATTATTTCCTAGTGAGCGCCAACTCTACAATTGTGTATTCTCGGATTCAACATCTGCATCTTCTGATCTCTATTTCTCAGAGTTATGTCGTGGAGCAACCATTGAACTTTTGAATTTTGCAGATTCGTTTGCAAATCGAAGCCCCTCTGCGTGGCGTTTGTTTAAAATCCTCAACATGTTAGAGACTCTGAGTGATCTAATTCCCGAATTTGAATCATTGTTCCATGATTCGTTAGTGAATGAAGCAATAAAAATAAAAAATAAATTGGGTGAAATATGTAGAAGCATTTTTATGGAATTTGGAGATATGATATTCCTTACATCGGATGCGGAGTTTGATTGTTGGGTTGATGGTGGCATTCATCCAATGACCTGCGCGGCCACCGGCTACATTGTTATGGCTTGTTGGTCAAGAAAGAGCCTGGAGCAAATTTTAAGAGCACACCCCTTGGTTGTTACTGATGGGGCGGGAGCATCTTTATTTTATTCACAGATGGAGTTGATACTGGAGCAATTTGAGAGAAAACTGGAAACTAAGTCACAAGCTTATGAAGATCCTGCTTTGCGCTATCTTTTCATGATAAATAATCTACGTCACGTTAAGTGCAGCTTGGAAACTTTTTGGGATGATAGGTTTTGTATAAACATGAGAAAATACTTTGAACTCTATTGTACAAGTTCTTGGAATAAGTTGATAAACTTTTTGGATATGAATATAAAAGAGTCAGTGGCACCCATTTCTGAAATAGATTCAATGAAAGACATACTCAATTTGTTCAATCAAAAGTTTAAGGAAATGTGCGGAATACAGTCTAAATGGCGTGTTTTTGATGAGCAACTAAGGAAACAAATGATAATGTTCATACAAAGCTTTTTGTTGCCAGCATATGGAAACTTCATCCGTATGTTTCAGAAAGTTGTTGGTAAAAATGCAGCCGACTATATAGAATATGAAATGTCTGATATTCAAGATCAACTCAACCAGTCTTTTTTATTACAAGATGTTTGTTGA 1986 0.3575 MTPLFIQTHRWMMHTKVWRFVGFASAIVGLLCYALSSSFNHLFGNWNFWKIIVYTIFSFIICLIILFARTWRDSRSLRFKAHSAFLVLVITSVYSFFSDKVMNGKPDAYSSISYASFALMSLSLSRQIQCGFEVDFMYFYLGCLIVQLLKFNLLLAILGVCYTYCLIILRFSFACLNATSENHSFGPEEQLVGIQVDSQEREHFYTELERLLQQFGTCMKDLHKNNSSIDKMLLEKVKGNNKLVVTDHNFIIDAISHETINNLQETAKLMVEAGFEKECYEAYNTFRKEWLEELLKNKLLRLGKVGFQDYLIGRWIKTSEVALRVLFPSERQLYNCVFSDSTSASSDLYFSELCRGATIELLNFADSFANRSPSAWRLFKILNMLETLSDLIPEFESLFHDSLVNEAIKIKNKLGEICRSIFMEFGDMIFLTSDAEFDCWVDGGIHPMTCAATGYIVMACWSRKSLEQILRAHPLVVTDGAGASLFYSQMELILEQFERKLETKSQAYEDPALRYLFMINNLRHVKCSLETFWDDRFCINMRKYFELYCTSSWNKLINFLDMNIKESVAPISEIDSMKDILNLFNQKFKEMCGIQSKWRVFDEQLRKQMIMFIQSFLLPAYGNFIRMFQKVVGKNAADYIEYEMSDIQDQLNQSFLLQDVC 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01388 661 Pfam Exo70 exocyst complex subunit 314 653 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vifa1g01388 661 Coils Coil 487 507 - -
Vifa1g01388 661 PANTHER EXOCYST COMPLEX PROTEIN EXO70 226 651 IPR004140 GO:0000145|GO:0006887
Vifa1g01388 661 Gene3D Exocyst complex component Exo70 193 659 - -
Vifa1g01388 661 SUPERFAMILY Cullin repeat-like 208 653 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01388 Vifa-Chr1 225644727 225646712 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01388 245 655 EXO70 exocyst subunit family AT5G58430 40.920 2.21e-93 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01388 - - psat:127118474 1121.3