Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01387 ATGCCGATAAGAATATCCAATAGACTAATAAAGAAAAAGCTATGGAGAATATTAGCCATAGACGTCGATGTTTTAGATAATAGTAGCCAACAGAACCAGAACCTGTCTTTAAGAAGAAGGTTCAATCATGATGATGGGTATAACTGGAAAAAATATGAAGATAAATTAGCAAAAGGAAATGGAAACCAGAGAAGCTATTATAAATGTACTTGGCCAAATTGTGTTGTGAAGAAAAAAGTGGAGAGAACAATTGATGGAGATATAATTGAGACAGTATACAAAGGTACACATAATCATTGCTGGCCTACTTCTATAAGGAAGAGGAACTCATCATCAGAATATCTTTATTCACTTTTGCCTTCAGATACTTCTCCCATTGACTTGCGAGATCAATCATTTGACAGAGAAGAAGTGGATTTTGATGCAGAACATGAAAGCTCATCACTATCAATATGA 456 0.3443 MPIRISNRLIKKKLWRILAIDVDVLDNSSQQNQNLSLRRRFNHDDGYNWKKYEDKLAKGNGNQRSYYKCTWPNCVVKKKVERTIDGDIIETVYKGTHNHCWPTSIRKRNSSSEYLYSLLPSDTSPIDLRDQSFDREEVDFDAEHESSSLSI 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01387 151 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 42 124 IPR044810 GO:0003700
Vifa1g01387 151 ProSiteProfiles WRKY domain profile. 44 102 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01387 151 Pfam WRKY DNA -binding domain 44 99 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01387 151 SMART WRKY_cls 43 101 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01387 151 SUPERFAMILY WRKY DNA-binding domain 40 102 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g01387 151 Gene3D WRKY domain 29 103 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01387 Vifa-Chr1 225643383 225644357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01387 21 109 WRKY Transcription Factor Family AT1G13960 49.438 1.60e-23 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g01387 WRKY 1.7e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01387 K13424 - mtr:11415730 191.815