Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01386 ATGGTTCTTCGTTCTAATTGGGATTCTCGCGGCGAGATTAGAAATTTAAGAGTGGAAAATGGTAGCGATCATCGTGATGTAGCCATAGACGTCGATGTTTTAGATAATAGTAGCCAACAGAACCAGAACCTGTCTTTAAGAAGAAGGTTCAATCATGATGATGGGTATAACTGGAAAAAATATGAAGATAAATTAGCAAAAGGAAATGGAAACCAGAGAAGCTATTATAAATGTACTTGGCCAAATTGTGTTGTGAAGAAAAAAGTGGAGAGAACAATTGATGGAGATATAATTGAGACAGTATACAAAGGTACACATAATCATTGCTGGCCTACTTCTATAAGGAAGAGGAACTCATCATCAGAATATCTTTATTCACTTTTGCCTTCAGATACTTCTCCCATTGACTTGCGAGATCAATCATTTGACAGAGAAGAAGTGGATTTTGATGCAGAACATGAAAGCTCATCACTATCAATATGA 483 0.3623 MVLRSNWDSRGEIRNLRVENGSDHRDVAIDVDVLDNSSQQNQNLSLRRRFNHDDGYNWKKYEDKLAKGNGNQRSYYKCTWPNCVVKKKVERTIDGDIIETVYKGTHNHCWPTSIRKRNSSSEYLYSLLPSDTSPIDLRDQSFDREEVDFDAEHESSSLSI 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01386 160 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 51 133 IPR044810 GO:0003700
Vifa1g01386 160 ProSiteProfiles WRKY domain profile. 53 111 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01386 160 SMART WRKY_cls 52 110 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01386 160 SUPERFAMILY WRKY DNA-binding domain 49 111 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g01386 160 Pfam WRKY DNA -binding domain 53 108 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g01386 160 Gene3D WRKY domain 38 112 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01386 Vifa-Chr1 225643383 225643865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01386 30 118 WRKY Transcription Factor Family AT1G13960 49.438 1.62e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g01386 WRKY 1.9e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01386 K13424 - mtr:11415730 207.608