Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01385 ATGACACCCTTGTTCATCCAAACTCATAGGTGGATGATGCATACAAAGTTTCATCATTTGTCTAATTATTTTGTTTGCAAGAACATGGCGAGACTCAAGAAGTCTTCGGTTCAAAGCTCATTCAGCATTTCTGGTATTGAGAATCATTCTTTTGGACCTGAAGAACAACTTGTAGGCATTCAAGTTGATTCACAAGAAAGAGAACACTTTTATACAGAGTTGGAACGGTTGTTGCAACAGTTTGGAACATGTATGAAAGATTTACACAAAAACAATTCAAGCATTGACAAAATGCTTTTGGAAAAGGTGAAAGGTAACAATAAATTGGTAGTGACTGACCACAACTTCATAATTGATGCGATTTCACATGAAACAATTAATAACCTTCAAGAAACGGCAAAGTTAATGGTTGACGCTGGATTTGAAAAAGAGTGCTACGAGGCTTACAACACTTTTCGTAAAGAATGGTTGGAAGAGTTACTAAAGAATAAGTTATTAAGATTGGGGAAGGTGGGATTTCAAGATTACTTAATTGGAAGATGGATAAAAACTTCAGAGGTTGCTCTTAGAGTATTATTTCCTAATTCGTTTGCAAATCGAAGCCCCTCTGCGTGGCGTTTGTTTAAAATCCTCAACATGTTAGAGACTCTGAGTGATCTAACTCCTGAATTTGAATCATTGTTCCACGATTCGTTAGTGAATGAAGCAATAAAAATAAAAAATAAATTGGGTGAAATATGTAGAAGCATTTTTATGGAATTTGGAGATATGATATTCCATACATCGGATGCGGAGTTTGATTGTTGGGTTGATGGTGGCATTCATCCAATGACCTGCGCGGCCACCGGCTACATTGTTATGGCTTGTTGGTCAAGAAAGAGCCTGGAGCAAATTTTAAGAGCACACCCCTTGGTTGTTAGTGATGGGGCGGGAACATCTTTATTTTATTCACAGATGGAGTTGATACTGGAGCAATTTGAGAGAAAACTGGAAACTAAGTCACAAGCTTATGAAGATCCTGCTTTGCGCTATCTTTTCATGATAAATAATCTACGTCACGTTAAGTGCAGCTTGGAAACTTTTTGGGATGATAGGTTTTGTATAAACATGAGAAAATACTTTGAACTCTATTGTACAAGTTCTTGGAATAAGTTGATAAACTTTTTGGATATGAATATAAAAGAGTCAGTGGCACCCATTTCTGAAATAGATTCAATGAAAGACATACTCAATTTGTTCAATCAAAAGTTTAAGGAAATGTGTGGAATACAGTCTAAATGGCGTGTTTTTGATGAGCAACTGAGGAAACAAATGATAATGTTCATACAAAGCTTTTTGTTGCCAGCATATGGAAACTTCATCGGTATGTTTCAGAAAGTTGTTGGTAAAAATGCAGCCGACTATATAGAGTATGAAATGTCTGATATTCAAGATCAACTCAACCAGTCTTTTTTATTACAAGATGTTTGTTGA 1473 0.3591 MTPLFIQTHRWMMHTKFHHLSNYFVCKNMARLKKSSVQSSFSISGIENHSFGPEEQLVGIQVDSQEREHFYTELERLLQQFGTCMKDLHKNNSSIDKMLLEKVKGNNKLVVTDHNFIIDAISHETINNLQETAKLMVDAGFEKECYEAYNTFRKEWLEELLKNKLLRLGKVGFQDYLIGRWIKTSEVALRVLFPNSFANRSPSAWRLFKILNMLETLSDLTPEFESLFHDSLVNEAIKIKNKLGEICRSIFMEFGDMIFHTSDAEFDCWVDGGIHPMTCAATGYIVMACWSRKSLEQILRAHPLVVSDGAGTSLFYSQMELILEQFERKLETKSQAYEDPALRYLFMINNLRHVKCSLETFWDDRFCINMRKYFELYCTSSWNKLINFLDMNIKESVAPISEIDSMKDILNLFNQKFKEMCGIQSKWRVFDEQLRKQMIMFIQSFLLPAYGNFIGMFQKVVGKNAADYIEYEMSDIQDQLNQSFLLQDVC 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01385 490 Gene3D Exocyst complex component Exo70 58 488 - -
Vifa1g01385 490 Coils Coil 316 336 - -
Vifa1g01385 490 Pfam Exo70 exocyst complex subunit 194 482 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vifa1g01385 490 SUPERFAMILY Cullin repeat-like 74 482 IPR016159 -
Vifa1g01385 490 PANTHER EXOCYST COMPLEX PROTEIN EXO70 75 195 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01385 Vifa-Chr1 225615080 225617065 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01385 111 484 EXO70 exocyst subunit family AT5G58430 36.009 5.62e-76 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01385 - K07195 psat:127118474 736.487