Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01381 ATGTCCGAAAACGGAGAAGAGAAATTACTCGCTATGGCACGGCACATAGCAAAAACGCTGGGCCATAACAACAATGTTATGGCCGATGACATTCTCCAAATATTCTCGAACTTCGATGGAAGATTCTCGAAGGAAAATCTTTCCGAGAAAGTCGCAGTGTTAGATACAGATCCCAGAGCCTGCGCCGCACTGGATCACTGCCTCAAAGCCCTCGACCGTCGGATCTCTCACTATGTCTCATCCGATCACCCTATCTGGGCGGATTCCGCTGACGCCGAGGCCTTCCTTGAAGCCGTTGACGACCTAATCGCCTCCGTTGCAGAGTGGAACCACCTTAATGCCGATAAATCCATCGCAACGTGTCTTGCACGCGCCGAAGATATGCTCCAGCACGCTATGTTCCGTCTCGAGGATGAGTTTCGATCCCTCATGGAACGCGGTGGTGAGTCGTTTGACCTGACTCAACCGTACAACAACGGTTCTACTGAGAATTTACCGTTTGATTCGGAAGAAGAAGAGGAAGATATCAACGGTGGAGAAGAAGAGGATCTGATTCCTGTTGCGACCCCGGTAACTGACTATGACATCGTGATTGATGCTTTGCCGTCGGCGACGATTAACGACCTTCACGAGATCGCAAAGCGAATGGTTGCTGGTAATTTTGGAAAGGAATGTTCGCATGTTTACAGTAGTTGCCGGAGGGAGTTCTTGGAGGAAAGCCTCTCGAGATTAGGGTTACAGAAGCTTAGTATTGAGGATGTTCAGAAGATGCCATGGCAGGATATAGAAGACGAGATTGAAAGATGGATTAAAGCTTCCAATGTTGCTCTCAAGATACTTTTCCCCAGCGAGCGAAGGCTCTGTGATCGTGTTTTCTTTGGATTCTCCTCCGCTGCGGATTTCTCCTTCATGGAGGTTTGTAGAGGATCCGCCGTTCAGTTGTTGAACTTTGCTGATGCTGTTGCTATTGGAAGCCGTTCGCCTGATCGGTTATTCAGAATCCTCGACGTGTTTGAAACATTGCGTGACCTAATTCCAGAGTTTGAGGTTTTATTTTGTGATCAGTATAGTGTGTCTTTAAGGAATGAAGCGTTGACGATATGGAAGAGATTAGGGGAAGCGATTAGAGGCATTTTCATGGAGTTGGAGAATCTGATTCGCCGAGATCCGGCTAAGGCCGGAGTTCCTGGTGGTGGACTTCACCCGATTACCCGATATGTGATGAACTACCTTCGAGCTGCGTGTCGATCCCAGCAAACATTAGAGCAAGTGTTTGAAGACTATGGACATCCTTTAAAGGAATTTCCCAAGATTGATGATAGAAGGCATTCATCTTCGTCTTTGTCAGTGCAAATGGATTGGATTATGGAGCTATTAGAAAGCAATTTGGAAGCGAAATCCAGAATCTATAAAGATCCTGCTTTGTGCTATGTTTTCTTGATAAATAACTGCAAGTACATTGTTCAAAAGGCCGAGGACAGCGAGTTAGGAGCACTTTTAGGAGATGATTGGATCAAGAAACACACTGCGAAAATTCGGCAGTACCATATGCAGTATCAAAGAAGCTCATGGAACAAGGTGTTTGGGTTTCTAAAATTGGAGAACAGTGGCTCAATGCCACCTAATGCTGTAGCAAAGTCTATGAAAGAGAAGCTGAAATCATTCAACATGGCGTTTGATGATTTATGCAGGGTTCAATCTTCATGGTTTATCTTTGATAAACAGCTTAAGGAAGAAATAAGAAATTCCATTGAGAAACTGTTGGTACCAGCTTATAGAAAATTCATTGGGAGGTTTCAGAGTCTTGTTGAAGTTGGTAAGAATACTGATAAATATGTGAAGTATGAAACAGAGGATATTGAAGTGAAACTCAACGATTTGTTTCAAGGAAGCAGTGGATCAACTGGTAGCAGAAAACGAAGCTAA 1926 0.446 MSENGEEKLLAMARHIAKTLGHNNNVMADDILQIFSNFDGRFSKENLSEKVAVLDTDPRACAALDHCLKALDRRISHYVSSDHPIWADSADAEAFLEAVDDLIASVAEWNHLNADKSIATCLARAEDMLQHAMFRLEDEFRSLMERGGESFDLTQPYNNGSTENLPFDSEEEEEDINGGEEEDLIPVATPVTDYDIVIDALPSATINDLHEIAKRMVAGNFGKECSHVYSSCRREFLEESLSRLGLQKLSIEDVQKMPWQDIEDEIERWIKASNVALKILFPSERRLCDRVFFGFSSAADFSFMEVCRGSAVQLLNFADAVAIGSRSPDRLFRILDVFETLRDLIPEFEVLFCDQYSVSLRNEALTIWKRLGEAIRGIFMELENLIRRDPAKAGVPGGGLHPITRYVMNYLRAACRSQQTLEQVFEDYGHPLKEFPKIDDRRHSSSSLSVQMDWIMELLESNLEAKSRIYKDPALCYVFLINNCKYIVQKAEDSELGALLGDDWIKKHTAKIRQYHMQYQRSSWNKVFGFLKLENSGSMPPNAVAKSMKEKLKSFNMAFDDLCRVQSSWFIFDKQLKEEIRNSIEKLLVPAYRKFIGRFQSLVEVGKNTDKYVKYETEDIEVKLNDLFQGSSGSTGSRKRS 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01381 641 MobiDBLite consensus disorder prediction 151 173 - -
Vifa1g01381 641 Pfam Exo70 exocyst complex subunit 267 626 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vifa1g01381 641 SUPERFAMILY Cullin repeat-like 86 628 IPR016159 -
Vifa1g01381 641 PANTHER EXOCYST COMPLEX PROTEIN EXO70 67 630 IPR004140 GO:0000145|GO:0006887
Vifa1g01381 641 FunFam Exocyst subunit Exo70 family protein 79 636 - -
Vifa1g01381 641 Gene3D Exocyst complex component Exo70 84 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01381 Vifa-Chr1 225114532 225116457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01381 1 632 EXO70 exocyst subunit family AT5G58430 67.767 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01381 K07195 - gmx:100803694 992.26