Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01380 ATGGGTAAAGATGTTGAGGTTCAAGAACAAGGTGCTGAATTCTCAGCTAAGGATTACCAAGATCCACCACCAGCACCACTTTTTGACTCAGCAGAGTTTGGAAAATGGTCTTTGTACAGAGCTGTTATAGCAGAGTTCGTAGCAACTCTTCTTTTTCTTTACATCACTGTTTTGACCATTATTGGTTACAAAAGACAATCTGATACCACTATTACCGGTAACACTGAGTGTGATGGTGTTGGGCTTTTGGGTATTGCTTGGGCTTTTGGTGGTATGATCTTCGTCCTTGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAATCCAGCAGTGACATTTGGACTATTTGTGGGACGCAAGGTGTCTTTAGTAAGGGCACTACTATACATAATAGCACAATGTTTAGGGGCAATTTGTGGTGCTGGACTAGCTAAGGGGTTCCAAAAATCATACTACAACACGTATGGTGGAGGAGCTAACACTGTTTCTGATGGTTATAGTAAAGGCACTGCTTTGGGTGCTGAGATTATTGGTACCTTTGTGCTAGTCTACACTGTTTTCTCTGCTACTGACCCTAAAAGAAGTGCTAGGGATTCTCATGTTCCTGTATTGGCACCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCAACAATCCCCGTCACCGGAACCGGTATTAACCCCGCTAGAAGTTTCGGACCCGCTGTTATCTTCAACAACGACAAAGCTTGGGATGACCAGTGGATTTATTGGGTTGGACCATTTATTGGTGCTGCAGTGGCTGCAATCTACCACCAATACATTCTAAGAGGATCAGCAATAAAAGCTCTTGGATCCTTCAGGAGCAATGCTTAA 864 0.4387 MGKDVEVQEQGAEFSAKDYQDPPPAPLFDSAEFGKWSLYRAVIAEFVATLLFLYITVLTIIGYKRQSDTTITGNTECDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFVGRKVSLVRALLYIIAQCLGAICGAGLAKGFQKSYYNTYGGGANTVSDGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFIGAAVAAIYHQYILRGSAIKALGSFRSNA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01380 287 FunFam Probable aquaporin PIP1-2 25 287 - -
Vifa1g01380 287 Pfam Major intrinsic protein 34 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01380 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Vifa1g01380 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Vifa1g01380 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01380 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01380 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01380 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01380 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01380 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01380 287 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01380 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g01380 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 276 IPR034294 -
Vifa1g01380 287 SUPERFAMILY Aquaporin-like 35 272 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01380 Vifa-Chr1 224602870 224604545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01380 6 287 Major Intrinsic Protein MIP AT4G35100 80.142 6.89e-168 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01380 K09872 - gmx:732581 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01380 1 224602870 224604545 Vifa1g01380 1 224602870 224604545 ECH
Vifa5g02976 5 982299600 982300873 Vifa1g01380 1 224602870 224604545 ECH