Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01376 ATGCATGAAATCCTAATTCGAGTCACCGGAGGCGAGGTTGGCGCAGCGAGTTCACTCGCTCCCAAAATCGGTCCACTCGGTCTCTCCCCAAAGAAGATTGGAGAAGACATTGCCAAGGAAACCTCTAAGGACTGGAAGGGTTTAAGAGTGACAGTGAAGCTTACCGTCCAGAATCGTCAGGCAAAGGTCGCGGTTGTTCCATCGGCGGCCGCGCTTGTCATCAAGGCCTTGAAGGAGCCGGAACGGGATCGGAAGAAGACGAAGAATATCAAACATAATGGGAATATTTCGCTGGATGATGTTGTTGAAATTGCGAAGATTATGAAGCCGAGATCGATGGCAAAGGAGCTTGCGGGGACTGTGAAGGAGATTTTGGGTACGTGTGTGTCTGCTGGCTGTACTGTTGATGGGAAGGACCCGAAGGATTTGCAGCAGGAGATTAATGATGGGGATGTTGAAATTCCTCAGGATTAA 474 0.4979 MHEILIRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETSKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVVEIAKIMKPRSMAKELAGTVKEILGTCVSAGCTVDGKDPKDLQQEINDGDVEIPQD 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01376 157 PANTHER 60S RIBOSOMAL PROTEIN L12 4 142 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vifa1g01376 157 SUPERFAMILY Ribosomal protein L11, C-terminal domain 67 140 IPR036769 -
Vifa1g01376 157 Gene3D - 1 72 IPR036796 -
Vifa1g01376 157 Hamap 50S ribosomal protein L11 [rplK]. 1 137 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vifa1g01376 157 Pfam Ribosomal protein L11, N-terminal domain 6 60 IPR020784 -
Vifa1g01376 157 Pfam Ribosomal protein L11, RNA binding domain 66 135 IPR020783 GO:0003735|GO:0005840|GO:0006412
Vifa1g01376 157 FunFam 60S ribosomal protein L12 1 72 - -
Vifa1g01376 157 SMART rl11c 4 136 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vifa1g01376 157 Gene3D - 73 155 IPR036769 -
Vifa1g01376 157 MobiDBLite consensus disorder prediction 136 157 - -
Vifa1g01376 157 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 3 78 IPR036796 -
Vifa1g01376 157 FunFam 60S ribosomal protein L12 73 155 - -
Vifa1g01376 157 CDD Ribosomal_L11 6 135 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01376 Vifa-Chr1 224032302 224034583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01376 3 157 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 86.452 1.71e-97 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01376 K02870 - twl:119984749 292.352