Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01374 ATGGCTACAGAAGCGAGAGCGAAGTTCCAAAACCCAGATTACCGACCCGATTTTCACACCTTGACGCCGTCAACTCACGACGGTCTTCACTTCTGGCAGTTAATGATTGCCGGATCCGTCGCCGGTTGCATCGAACACATGGCCATGTTTCCAGTCGACACCGTTAAAACTCACATGCAAGCAATCACTTCTTGTCCGATTAAATCCGTTTCCGTCCGTCAAGCCGTCCGTTCGATTCTCCAAACGGAAGGTCCCTCGGCGTTATACCGCGGCATCGGCGCAATGGGGCTCGGCGCGGGGCCGGCACACGCCGTTTATTTCTCGGTTTATGAGACTTGTAAAAAGAAATTCTCGCAAGGGAACCCTAATAATTCGGTAGCTCATGCTGCTTCGGGTGTTTGTGCTACGGTTGCGAGTGACGCGGTGTTTACGCCGATGGATATGGTGAAACAGAGGTTGCAGTTGAGTAAGAGTGCTTATAAGGGGGTTTTTGATTGTGTGAAGAGGGTTTTGAGTGAGGAGGGGTTTGGGGCTTTTTATGCTTCGTATAGGACTACGGTTTTGATGAATGCACCTTTTACGGCTGTGCATTTTGCTACTTATGAGGCGGCGAAACGGGGGTTGAATGAGGTTTCACCGGACAGTGCGGATGATGAACGGTTGATTGTTCATGCTACGGCTGGGGCGGCTGCTGGTGGTTTGGCTGCTGCTGTTACAACACCGCTTGATGTTGTTAAAACTCAACTGCAATGTCAGGGTGTGTGTGGATGTGATAGGTTCAAAAATGGTTCAATTGGGGGTGTTATTAAAACAATAGTGAAAAAAGATGGACCCAGAGGGCTCATGCGAGGCTGGGTTCCAAGGATGCTCTTTCATGCTCCTGCAGCTGCTATTTGCTGGTCAACATATGAAGCTGGAAAGTCCTTTTTCCAAGATTACAATGAGCAGAAAGATAGCGGAACCGTCACCTAA 972 0.4938 MATEARAKFQNPDYRPDFHTLTPSTHDGLHFWQLMIAGSVAGCIEHMAMFPVDTVKTHMQAITSCPIKSVSVRQAVRSILQTEGPSALYRGIGAMGLGAGPAHAVYFSVYETCKKKFSQGNPNNSVAHAASGVCATVASDAVFTPMDMVKQRLQLSKSAYKGVFDCVKRVLSEEGFGAFYASYRTTVLMNAPFTAVHFATYEAAKRGLNEVSPDSADDERLIVHATAGAAAGGLAAAVTTPLDVVKTQLQCQGVCGCDRFKNGSIGGVIKTIVKKDGPRGLMRGWVPRMLFHAPAAAICWSTYEAGKSFFQDYNEQKDSGTVT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01374 323 SUPERFAMILY Mitochondrial carrier 27 304 IPR023395 -
Vifa1g01374 323 Pfam Mitochondrial carrier protein 220 313 IPR018108 -
Vifa1g01374 323 Pfam Mitochondrial carrier protein 124 210 IPR018108 -
Vifa1g01374 323 Pfam Mitochondrial carrier protein 29 119 IPR018108 -
Vifa1g01374 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 309 IPR018108 -
Vifa1g01374 323 PRINTS Mitochondrial carrier protein signature 180 198 IPR002067 GO:0055085
Vifa1g01374 323 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Vifa1g01374 323 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Vifa1g01374 323 PRINTS Mitochondrial carrier protein signature 228 250 IPR002067 GO:0055085
Vifa1g01374 323 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Vifa1g01374 323 PANTHER MITOFERRIN-1-RELATED 24 312 - -
Vifa1g01374 323 FunFam Mitochondrial RNA-splicing protein MRS3 158 321 - -
Vifa1g01374 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 116 IPR018108 -
Vifa1g01374 323 Gene3D Mitochondrial carrier domain 125 323 IPR023395 -
Vifa1g01374 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 207 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01374 Vifa-Chr1 223561084 223565301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01374 130 319 Chloroplast and Mitochondria Gene Families AT1G07030 26.768 2.29e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01374 K15113 - gmx:100802640 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01374 1 223561084 223565301 Vifa1g01374 1 223561084 223565301 ECH