Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01368 ATGAGCATTGGTTTTATAGCTTTTGTTGCTTTGAGGCGTGACCATTCTAAGGCACTTTCGTGGTTCTTGAAGGCAGTGGAGAAGGGTGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATATATGCCAGGGGAGCCGGTGTTGAGAGGAACTATACAAAAGCCTTTGAATGGCTTACTCTAGCATCTAAGCATCACCTCTACTCTGCTTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGGAGTCGACAGCAAAAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTTTCTCAAGGGGATTGGAGTGAAAAGAGATGTGCGGTTGGCATGTAAATATTTTATAGTGGCTGCCAACAATGGTCAACCAAAGGCTTTCTACCAACTTGCAAAGATTTTTCATCTTGGTGTTGGCTTCAAGAAGAACGTTCCATTGGGATCCACGCTTTACCCTCGAAAGAAGGGAAACTTGTCGAATATCGAGGTAGTGTTGCATCGTCATATGGATGGGGAAACCACTGAATATGAAGAATTAAGAGCTGAAAACGGTATTTTTTCTCTCTCAAGGAGAGTTGAGGCTCAAGAGAGTTTGTCGGTAGCCATAGAGGCTCACAATAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGGTGACTAAAGAAAATAATCAAGCATGCAAAAAACTTTTAAAACTCATGGGAGTGCCCGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAGTGTGGTGCTCTTTGCAAAGTTGGAAAAGCAACTTCACATCTGCTCCTCTACCGGAGAGGATAG 858 0.4312 MSIGFIAFVALRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTKAKEYFEKAAENDEVGGHYNLGVMFLKGIGVKRDVRLACKYFIVAANNGQPKAFYQLAKIFHLGVGFKKNVPLGSTLYPRKKGNLSNIEVVLHRHMDGETTEYEELRAENGIFSLSRRVEAQESLSVAIEAHNKEDIEKFSKRTVKVTKENNQACKKLLKLMGVPVVEAPSEAEAQCGALCKVGKATSHLLLYRRG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01368 285 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 10 167 IPR044623 GO:0030433
Vifa1g01368 285 ProSitePatterns XPG protein signature 2. 252 266 IPR019974 GO:0016788
Vifa1g01368 285 Pfam Sel1 repeat 68 102 IPR006597 -
Vifa1g01368 285 Pfam Sel1 repeat 32 64 IPR006597 -
Vifa1g01368 285 Pfam Sel1 repeat 107 138 IPR006597 -
Vifa1g01368 285 Pfam Sel1 repeat 12 29 IPR006597 -
Vifa1g01368 285 Gene3D Tetratricopeptide repeat domain 67 170 IPR011990 GO:0005515
Vifa1g01368 285 Gene3D Tetratricopeptide repeat domain 9 66 IPR011990 GO:0005515
Vifa1g01368 285 SUPERFAMILY PIN domain-like 203 275 IPR029060 -
Vifa1g01368 285 SUPERFAMILY HCP-like 86 165 - -
Vifa1g01368 285 Gene3D - 183 282 - -
Vifa1g01368 285 SMART sel1 67 103 IPR006597 -
Vifa1g01368 285 SMART sel1 104 139 IPR006597 -
Vifa1g01368 285 SMART sel1 1 30 IPR006597 -
Vifa1g01368 285 SMART sel1 31 66 IPR006597 -
Vifa1g01368 285 SUPERFAMILY HCP-like 10 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01368 Vifa-Chr1 222593322 222595141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01368 205 274 Core DNA Replication Machinery Family AT5G26680 72.857 2.99e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01368 K14026 - psat:127101456 315.849