Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01363 ATGGCAATGGCTGTTGCACAACAGCAGAGAGATAACAGCATTGAGAGACACATTGATTCTTCTGGGAAATATGTGCGTTACACTGCTGAACAGATTGAAGCTTTGGAGAAGGTTTATGTGGAATGCTCTAAGCCAAGTTCCTTGAGAAGGCAACAGCTGATTCGGGAGTGTCCGGTTTTAGGCAACATTGAGCCTAAGCAAATCAAGGTTTGGTTTCAGAATAGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCTCAGCTTCAGACTGTGAACAGGAAACTAGCGGCAATGAACAAGCTGTTGACGGAGGAAAATGAGCGGTTGCAGAAGCAGGTTTCGGAGCTGGTGAATGAGAATGGGTTTATGCGCCAGCAATTGCAACCTGCCGTCACAGCAGCTCCAAATGCTGATGGCAGTGCTAGTGATTCTGCGGCTGCTACTCCTCGGAGCACCATGAGAGATGCTAATAGCCCTGCTGGATTCCAATCAATTGCAGAGGAAACATTGGCAGAGTTCCTTTCAAAGGCTACCGGAACTGCTGTCGAATGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTTGCCATTTCTCAAGGTTGCAACGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTTCAAAGATTGTGGAGATCCTAAAAGACCGCTCAACTTGGTTTCGGGATTGTCGGAGTTCCGAAATGTTCACAATGTTCTCAACTGGAAATGGAGGGACAATTGAACTTCTTTACACACAGACGTATTCTCCAATGACGTTGTCTACTGCTCGGGATTTCTGGACTCTAAGATACACTACTAATCTCGAAAATGGAAGTATTGTGGTTTGTGAAAGGTCACTGTCTGGTTCTGGTGCTGGCCCTAATGCTGCTGCGGCCTCGCAGTTTGTGAGGGCTGAAATGCTTCCTAGTGGCTACTTGGTTCGACCATGTGAAGGTGGAGGGTCAATCATCCATATTGTGGACCACCTAGACCTACAGGCATGGAGTGTTCCAGAAGTGCTGCGGCCATACTATGAATCATCAAAAATGGTAGCTCAGAGAATGACAATTTCTGCACTTCGCTATATCAAGCAAATAGCTCAAGAAACAAGTGGTGAGGTGGTATATAGCATAGGCAGGCAACCTGCTGTTTTGAGAACTTTTAGCCAGCGGTTGATCAGAGGATTCAACGATGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTTGTGCACTGTGATGGCGACGGGGGCGTTACTATTTCAGTAAATTCAATCAAGAATTTGAGCAGCACTTCTAATCCAGCAAGTTCCCTTTCACTCCTTGGAGGAATTGTCTGTGCCAAAGCTTCTATGTTACTCCAAAACACCACTCCTGCTGTTTTAGTTCGTTTTCTGAGGGAACATCGCTCAGAATGGGCTGATTTTAGTGTTGACGCCTTTTCTGCGGCATCGCTTAAAGCTGGCACCTATGGCTATCCTGGAATGAGGTCTACGAGGTTCACCGGAAATCAAGCAATCATGCCTCTTGGACAGACAATTGAACATGAAGAGATGCTAGAAATTATCCGCCTTGAAGGCCACGCTATTGGTCAAGAAGATTCTTTTGTTTCGAGGGATGTTCATCTCTTACAGTTATGTAATGGAATTGACGAGAATGCTGTGGGGGCTTGTTCCGAGCTCATATTTGCTCCAATCGATGACATGTTCCCAGAAGATGCTCCATTGGTGCCTTCTGGTTTCCGCATTGCCCTGTTGAATTCACAACCAGGTGATAAAAATAATGCAATGACAGCTAATCGAACCTTAGATTTGACATCTGGTCTTGAAATAGGCACTACAACAACTCATGCCACTGGTGATGCATCGTGTCCTAACAATCGATGCGTGTTGACTGTTGCCTTCCAGTTTCCTTTTGAAAGTGGTCTGCAGGATAACGTTGCAGCCATGGCAAGTCAGTATGTCCGTCGCGTGATTTCCGCCGTGCAGGCAGTTGCCATTGCTATATCTCCATCCAATACTAACCCTGCCGTTGGAGCAAAACTCTCCCCTGGCTCTCCGGAAGCCCTTACGCTAGCTCAATGGATCTCCAAGAGCTATCGTAATTGTTTCGCGACGGAGCTACTGAGATCTGAATCTCTTACCGGTGATATGGTTCTGAAACATTTGTGGCATCATCCAGATGCTATTTTATGCTGTTCTTTGAAGACGGTGCCCGTATTCATCTTCGCAAACCAGGCTGGCCTTGACATGCTGGAAACAACACTAGTGGCTCTACAAGACATATCGCTGGACAAAATATTCGACGATCCTGCTCGCAAGAATTTGATTGGATACTTTGCCAAGCTAATGCAGCAGGGCTTTGCTTGTATGCCAGCTGGGATCTGCATGTCAACAATGGGGCGGCACGCTTCATACGATCAAGCTGTCGCGTGGAAAGTGCTTGCTGATGACAACAGTGTTCACTGTTTAGCTTTCTCTTTCATGAATTGGTCATTTATATGA 2529 0.4654 MAMAVAQQQRDNSIERHIDSSGKYVRYTAEQIEALEKVYVECSKPSSLRRQQLIRECPVLGNIEPKQIKVWFQNRRCREKQRKEASQLQTVNRKLAAMNKLLTEENERLQKQVSELVNENGFMRQQLQPAVTAAPNADGSASDSAAATPRSTMRDANSPAGFQSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSVGIFAISQGCNGVAARACGLVSLEPSKIVEILKDRSTWFRDCRSSEMFTMFSTGNGGTIELLYTQTYSPMTLSTARDFWTLRYTTNLENGSIVVCERSLSGSGAGPNAAAASQFVRAEMLPSGYLVRPCEGGGSIIHIVDHLDLQAWSVPEVLRPYYESSKMVAQRMTISALRYIKQIAQETSGEVVYSIGRQPAVLRTFSQRLIRGFNDAVNGFNDDGWSVVHCDGDGGVTISVNSIKNLSSTSNPASSLSLLGGIVCAKASMLLQNTTPAVLVRFLREHRSEWADFSVDAFSAASLKAGTYGYPGMRSTRFTGNQAIMPLGQTIEHEEMLEIIRLEGHAIGQEDSFVSRDVHLLQLCNGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIALLNSQPGDKNNAMTANRTLDLTSGLEIGTTTTHATGDASCPNNRCVLTVAFQFPFESGLQDNVAAMASQYVRRVISAVQAVAIAISPSNTNPAVGAKLSPGSPEALTLAQWISKSYRNCFATELLRSESLTGDMVLKHLWHHPDAILCCSLKTVPVFIFANQAGLDMLETTLVALQDISLDKIFDDPARKNLIGYFAKLMQQGFACMPAGICMSTMGRHASYDQAVAWKVLADDNSVHCLAFSFMNWSFI 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01363 842 SMART START_1 164 374 IPR002913 GO:0008289
Vifa1g01363 842 CDD homeodomain 23 83 IPR001356 GO:0003677
Vifa1g01363 842 Pfam Homeodomain 23 81 IPR001356 GO:0003677
Vifa1g01363 842 Gene3D - 199 381 IPR023393 -
Vifa1g01363 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 842 IPR044830 GO:0003700
Vifa1g01363 842 SMART HOX_1 20 86 IPR001356 GO:0003677
Vifa1g01363 842 CDD bZIP 75 114 - -
Vifa1g01363 842 Pfam START domain 165 372 IPR002913 GO:0008289
Vifa1g01363 842 SUPERFAMILY Bet v1-like 164 376 - -
Vifa1g01363 842 SUPERFAMILY Homeodomain-like 19 88 IPR009057 -
Vifa1g01363 842 ProSiteProfiles 'Homeobox' domain profile. 18 82 IPR001356 GO:0003677
Vifa1g01363 842 Gene3D - 17 90 - -
Vifa1g01363 842 Pfam MEKHLA domain 699 841 IPR013978 -
Vifa1g01363 842 Coils Coil 88 126 - -
Vifa1g01363 842 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Vifa1g01363 842 MobiDBLite consensus disorder prediction 130 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01363 Vifa-Chr1 221778005 221782412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01363 1 842 Homeobox Transcription Factor Family AT5G60690 72.909 0.0 1302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g01363 START 4.2e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01363 K09338 - gmx:100804870 1293.49