Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01358 ATGTTCTCCTCTCTTTCTACATTTCATCATTCTCTTGACACCGAATCATTTTATTTCACTGATCCCTCGGTTGAGTTGTTTCCAAGTTCTAATACAGATAACTCTTATAACCTCAATACTCCTCTTCCCTCACCTGCTCCTAATGAACTTGTTCCAGATGTTGAGCTCAATACTCGTCCGCCCTCACATGCTCCTACTGAACCTGTTCCGGATGTTGATATTGTACCTGTATCTCGCCATTCCACCCGAGTAAGTAATCCACCTACTCATCTTAATGATTACCATTGCTACTCTGCTATTAAAACTCTTCATGAGCCTTGTTCTTATCGAGAGGCAAATGATTCATTTGAGGTTGATTCCAATGAAGTTCATTCCACTGATGGTGATACATCTAATGTTGAATTGAATGATGATGAGGGTGACAGTTCTCAAAGCTCAGATGATGATGTAGACAATACTGATAATGACGATGAAGATGATTCGGTTGAATTAGATGCAATTGTAGGCGATAAAGTGGTAAGTATTAATTTCATGACTTCTGATGAAATCCGTGCTATGGAATTCGATTCTATTAATGAAGCTTATGATTTTTATTATAAGTATGGTAAATGCAAAGGTTTTGCCATTAGGAAAGGTGATATTAGGAGAAGAGGACCTGAAGGTAGTAAAATAACAGTAATGAGGCAGTTTATATGCAATAAGCATGGTTCAAGAGAGAATAAACACTTATGTAGGTTAGATAGGAAAAGAGATCACAAACGTTTGACCCGTACTAAATGTGCAGCTAGGCTTCGTGTGCACTACAGAGCCAAAAGGGCAACTGCATATCTACGTGATAAGTTTTTTGGATGTATAAGAACTACATCTCAATGTGAAGCAGTTAATGCAATAATCAAGAGTTACGTCAGGAAGAAAGACTGTATTTTTGAATTTATGCATAATTTTGAGGAGGCTCTTAGAGACTACAAAAACAATGAACTGATTGCTGATTTTAAATCGAAGTTTTTAGAATCGGTGTTGACAATTCACTCGCATTTGATTGAGAGCGATACCGCTAAAATTTATATAGCCCAGCTTTTCAAAGAAGTTAAAGATGAAATTATGAAGGCTGGTGCATTGATCATTAAGAACCTAATAGGATGTGGTGATGTGAAGATTTACACATTGACAAAATATTGTCAGGAAAAATACGAAAGAGAAGTTGTTTATGATGGTATAACATTTCAATGTTCATGTAGGTTATTTGATTCTCGTGGGCTTCCATGTTCTCATATTTTTTATGTCATGAAGGAAGAACATGTTGATCATATTCCTAGCAGTATGGTTTTGTCTTGGTAG 1338 0.364 MFSSLSTFHHSLDTESFYFTDPSVELFPSSNTDNSYNLNTPLPSPAPNELVPDVELNTRPPSHAPTEPVPDVDIVPVSRHSTRVSNPPTHLNDYHCYSAIKTLHEPCSYREANDSFEVDSNEVHSTDGDTSNVELNDDEGDSSQSSDDDVDNTDNDDEDDSVELDAIVGDKVVSINFMTSDEIRAMEFDSINEAYDFYYKYGKCKGFAIRKGDIRRRGPEGSKITVMRQFICNKHGSRENKHLCRLDRKRDHKRLTRTKCAARLRVHYRAKRATAYLRDKFFGCIRTTSQCEAVNAIIKSYVRKKDCIFEFMHNFEEALRDYKNNELIADFKSKFLESVLTIHSHLIESDTAKIYIAQLFKEVKDEIMKAGALIIKNLIGCGDVKIYTLTKYCQEKYEREVVYDGITFQCSCRLFDSRGLPCSHIFYVMKEEHVDHIPSSMVLSW 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01358 445 MobiDBLite consensus disorder prediction 118 164 - -
Vifa1g01358 445 ProSiteProfiles Zinc finger SWIM-type profile. 397 433 IPR007527 GO:0008270
Vifa1g01358 445 SMART 26again6 408 435 IPR006564 GO:0008270
Vifa1g01358 445 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 268 443 IPR031052 GO:0006355
Vifa1g01358 445 MobiDBLite consensus disorder prediction 132 164 - -
Vifa1g01358 445 Pfam FAR1 DNA-binding domain 196 270 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01358 Vifa-Chr1 221409242 221413900 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vifa1g01358 FAR1 3.9e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01358 - - tpra:123887991 276.174