Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01353 ATGAGTCACGCTAGTGCAGTTGGTGCCAAGGGGAAGAAGAAGGGTGGAACCTTCACCATTGACTGTGCTAAGCCAGTTGAAGACAAGATCATGGACATTGCTTCACTTGAGAAGTTTCTTCAAGAGAAGATCAAGGTTGGTGGCAAAACCGGTGCTCTTGGTGATTCTGTTACTATTGTCAGGGAAAAATCAAAGATAATTGTTACCTCTAATAGCAATTTCTCCAAAAGGTATTTGAAGTATTTGACCAAGAAGTACTTAAAAAAACATAATGTTAGAAACTGGCTCCGTATGATTGCTTCAAACAAAGATAGAAATATTTATGAGTTGAGGTACTTCAACATTGCAGAGAGAACGATTGAGAGATAA 369 0.3848 MSHASAVGAKGKKKGGTFTIDCAKPVEDKIMDIASLEKFLQEKIKVGGKTGALGDSVTIVREKSKIIVTSNSNFSKRYLKYLTKKYLKKHNVRNWLRMIASNKDRNIYELRYFNIAERTIER 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01353 122 Gene3D - 5 122 IPR038526 -
Vifa1g01353 122 PANTHER 60S RIBOSOMAL PROTEIN L22 1 121 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vifa1g01353 122 Pfam Ribosomal L22e protein family 16 118 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vifa1g01353 122 FunFam 60S ribosomal protein L22-2 5 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01353 Vifa-Chr1 219867321 219867689 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01353 1 117 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 81.197 3.26e-57 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01353 K02891 - gmx:100499952 189.504