Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01349 ATGAAGGACTCTTGGTTTTTCGACAAGAATTTTAATGGATTGTCGGATGAGATTTTCGATGAGTTTTGTTTTTTCGATTTTCCGTTAGAAGATGTCGAGACTAATCCTGTTGAAGAAGATTGGAGTGCTCAATTTCAAAGCATTGATGAGCCATATTTTGATGCTTTTTCAGTGACACCAGTGGGATCGTGTGGCAAAACCAAAAATGAAAATCCTCAATTTGGGAATGGCTTCTCTGCTGCTCCTTGTAATGAAATGTCCTCAATAAAAGAAGTGGCAAAGACTCTTGAACCAATATATGGAAAAACTATTCCCAACCAGGATGCTTCTTTCTATGAGAAAAAAGCCATGCGTCAATACAGTCCTGTTTCTGTTTTCGAAGGCAGTAGTGGTGCTTCCTCAGTTGAGAATTCCACCTTTGACCTGCCCGTCTTCCCAGTAAAGCGTGCTCGAAGTAAACGCCGGCGTCCCTCAAAGTCAAATCCTGTATTGTCATTTTCTTTCAAACCTAATTCCCTGACATTGCAAAAACATTATAAAACACCTGTCTCTAAGAAACAGAGAAAAAAGGAAGACTGCGTGCTCTCAGGTGATGCTGAGTCGGGATCTCAAGAGTCAGTTATCTTCAGAAAATGCACGCATTGCGAGATCACAAAGACTCCTCAATGGAGAGAGGGACCTAACGGTCCCAAAACGCTGTGCAATGCTTGTGGTGTTCGGTACAGGTCTGGCCGCCTCTATCCTGAATACCGTCCTGCAAACAGCCCCACTTTTGTAGAATCAGTTCACTCAAACTGTCACAAGAAAGTTCTGGAGATGCGAGGAGGCGGTGTCATCAAAGGAGGTGCTAGAAGCTGTTCTACGTCGCTGCCATCAACTCTTCCCGGAAACTCGGTAGGACAGCATTATCATGGAACTTATTGA 924 0.4351 MKDSWFFDKNFNGLSDEIFDEFCFFDFPLEDVETNPVEEDWSAQFQSIDEPYFDAFSVTPVGSCGKTKNENPQFGNGFSAAPCNEMSSIKEVAKTLEPIYGKTIPNQDASFYEKKAMRQYSPVSVFEGSSGASSVENSTFDLPVFPVKRARSKRRRPSKSNPVLSFSFKPNSLTLQKHYKTPVSKKQRKKEDCVLSGDAESGSQESVIFRKCTHCEITKTPQWREGPNGPKTLCNACGVRYRSGRLYPEYRPANSPTFVESVHSNCHKKVLEMRGGGVIKGGARSCSTSLPSTLPGNSVGQHYHGTY 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01349 307 Gene3D - 209 257 IPR013088 GO:0006355|GO:0008270
Vifa1g01349 307 ProSiteProfiles GATA-type zinc finger domain profile. 210 242 IPR000679 GO:0006355|GO:0043565
Vifa1g01349 307 FunFam GATA transcription factor 201 284 - -
Vifa1g01349 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 209 267 - -
Vifa1g01349 307 Pfam GATA zinc finger 212 245 IPR000679 GO:0006355|GO:0043565
Vifa1g01349 307 ProSitePatterns GATA-type zinc finger domain. 212 237 IPR000679 GO:0006355|GO:0043565
Vifa1g01349 307 SMART GATA_3 206 256 IPR000679 GO:0006355|GO:0043565
Vifa1g01349 307 PANTHER GATA TRANSCRIPTION FACTOR 33 274 - -
Vifa1g01349 307 CDD ZnF_GATA 211 258 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01349 Vifa-Chr1 219383986 219386546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01349 14 274 C2C2-Gata Transcription Factor Family AT1G08000 40.000 1.17e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa1g01349 GATA 2.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01349 - - psat:127087059 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01349 1 219383986 219386546 Vifa1g01349 1 219383986 219386546 ECH