Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01348 ATGAGATACATTTCATCCCTTAGAAGTCCAAAGAAAGAAGAACATCAAGTACCAGAAGCTATCACTCCAAAACTATCACCAAACTTCAACAAATCTTACACCAATGAAGATTTCTATCTTTTCGACGAGCTCGAAGAGTACTTGAACATCGAAGAAGAAGAAGAAAAGCAAACGTTATCACCACAAAATACATGTAACAGTAGTAATGAACTTCATTGGGATTTCATGGAATGGGATGAATTTCCATTTGATGAAGGGAAAGATGATAACATAAGCAAATGCAATTTTGAGGTGAAGAGAGAAAATTTCAATGATGGATTTTGGGAAGTGGATGATGAAAATAGTGTTGCTTTGAAATTGAATTTGAATTTGAATTTGAATTTGAATTATCAAGATGTTTTGGATGCATGGTCTGACCGTGGCTCTCCTTGGGCTGATGATTATTCTCTTTCATTGTCTTCCTCCAACAATTGCTCTTATATGGGAGAAGTGCCAATATTGGAAGAAGATAGAACAAGAAGAGAAGCAAGTGTTCTTAGGTACAAAGAGAAACGTCAGAACAGATTGTTCACTAAGAAGATAAGATACCAAGTTCGGAAATTAAACGCTGATAAAAGACCAAGAATCAAGGGTCGCTTTGTGAAGAGACATTGA 654 0.3578 MRYISSLRSPKKEEHQVPEAITPKLSPNFNKSYTNEDFYLFDELEEYLNIEEEEEKQTLSPQNTCNSSNELHWDFMEWDEFPFDEGKDDNISKCNFEVKRENFNDGFWEVDDENSVALKLNLNLNLNLNYQDVLDAWSDRGSPWADDYSLSLSSSNNCSYMGEVPILEEDRTRREASVLRYKEKRQNRLFTKKIRYQVRKLNADKRPRIKGRFVKRH 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01348 217 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 36 216 - -
Vifa1g01348 217 ProSiteProfiles CCT domain profile. 174 216 IPR010402 GO:0005515
Vifa1g01348 217 Pfam CCT motif 174 216 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01348 Vifa-Chr1 219280710 219281733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01348 104 216 C2C2-CO-like Transcription Factor Family AT1G73870 42.748 2.18e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g01348 CCT 3.2e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01348 - - cam:101495184 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01348 1 219280710 219281733 Vifa1g01348 1 219280710 219281733 ECH