Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01344 ATGAGAAAGTGTTGGTTGGTTGTTGGTGTGTTGATAGTTGTGATCTATGGAACTTTATTGGTAGTACAAGGTTACCCTATTGAGGATCTTGTTGTGAAGCTTCCAGGACAACCCAAAGTTGAATTCAGTCAATATGCTGGATATGTTGATGTTGATGTGAAACATGGAAGAAGCCTCTTCTACTATTTTGTTGAAGCTGATCATCAACCTGAGAAAAAACCTCTCACTCTTTGGCTCAATGGAGGTCCGGGATGTTCTTCCATTGGAGGAGGTGCTTTTACTGAATTGGGTCCGTTTTATCCCACCGGAGATGGACGCGGTTTACGAAAGAATTCAATGTCTTGGAATAGAGCTTCAAATCTCCTCTTTTTGGAGTCTCCTGCTGGAGTAGGTTGGTCATACTCGAACACAACTTCCGATTATAACATAGGTGATGCCTCCACAGCCAATGATGCGCTTTTGTTCTTGCTCAAATGGTATGAGAAGTTTCCTACCTACAAATCAAGAGATTTGTTTCTTACCGGAGAAAGCTATGCAGGACATTACATACCTCAGTTGGCGAACGCTATTCTTGATTATAATGCTCGTTCAACCGGATACAAATTCAAATTGAAAGGAGTTGCTATTGGAAACCCGCTTTTGAATCTGGACCGTGATGCACAAGCAACATACGATTACTTCTGGTCACACGGAATGATTTCCGATGAAGTTGGCCTTGCCATTACGAAAGAATGTGATTTTGATGATTATACCTTTGCATCTCCTCATAATGTATCTGAATCATGCAACAATGCCATGAGTGATGCTAATAAAATTGTCGGCGAATACATAAACAACTATGATGTACTTCTTGATGTTTGTTATCCGGCCATAGTTGAACAAGAACTTAGATTGAAAAAAATGGCGACTAAAATTAGTTTAGGTATAGATGTCTGCATGAGTTACGAAAGACGGTTCTACTTCAACCTCCCCGAGGTTCAAAAGGCTCTCCATGCTAACCGTACCAATCTTCTGTACCCATGGTCCATGTGCAGTCGTGTTTTAAATTACAGCGATACAGATCCTAACACGAATATGCTTCCAACTCTCAAACGGATTGTTGAAAACCATATTCCAGTATGGGTTTTCAGCGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTCATTCGTGAGCTAGCTCATGACCTGAAATTCAAGATTACAGTCCCATATGGTGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGCAACCGAATACGGAAACTTGTTGACTTTCGCGACTGTAAGAGGGGCAGCACACATGGTACCGTATGCACAACCTTCTAGAGCACTGCATCTATTCAGTAACTTTGTGAATGGTAGGAGATTGCCAAACACAACTCGGCCTTCAATCGATTAG 1413 0.4197 MRKCWLVVGVLIVVIYGTLLVVQGYPIEDLVVKLPGQPKVEFSQYAGYVDVDVKHGRSLFYYFVEADHQPEKKPLTLWLNGGPGCSSIGGGAFTELGPFYPTGDGRGLRKNSMSWNRASNLLFLESPAGVGWSYSNTTSDYNIGDASTANDALLFLLKWYEKFPTYKSRDLFLTGESYAGHYIPQLANAILDYNARSTGYKFKLKGVAIGNPLLNLDRDAQATYDYFWSHGMISDEVGLAITKECDFDDYTFASPHNVSESCNNAMSDANKIVGEYINNYDVLLDVCYPAIVEQELRLKKMATKISLGIDVCMSYERRFYFNLPEVQKALHANRTNLLYPWSMCSRVLNYSDTDPNTNMLPTLKRIVENHIPVWVFSGDQDSVVPLLGSRTLIRELAHDLKFKITVPYGAWFHKGQVGGWATEYGNLLTFATVRGAAHMVPYAQPSRALHLFSNFVNGRRLPNTTRPSID 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01344 470 Gene3D alpha/beta hydrolase 27 288 IPR029058 -
Vifa1g01344 470 Pfam Serine carboxypeptidase 36 458 IPR001563 GO:0004185|GO:0006508
Vifa1g01344 470 ProSitePatterns Serine carboxypeptidases, serine active site. 173 180 IPR018202 GO:0004185
Vifa1g01344 470 FunFam Carboxypeptidase 25 289 - -
Vifa1g01344 470 SUPERFAMILY alpha/beta-Hydrolases 21 465 IPR029058 -
Vifa1g01344 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 445 IPR001563 GO:0004185|GO:0006508
Vifa1g01344 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Vifa1g01344 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
Vifa1g01344 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Vifa1g01344 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Vifa1g01344 470 Gene3D - 312 348 - -
Vifa1g01344 470 Gene3D - 359 458 - -
Vifa1g01344 470 FunFam Carboxypeptidase 359 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01344 Vifa-Chr1 217924154 217927061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01344 318 461 Calmodulin-binding Proteins AT2G22960 25.170 7.53e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01344 K16297 - gmx:100803335 824.698